Illumina strelka issues

Illumina / strelka

Strelka2 germline and somatic small variant caller

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Problem with Strelka2's default parameter "maxIndelSize = 49"

#194 Tinnaa opened 3 years ago
1
variant position in repeats

#193 cariaso opened 3 years ago
0
Appropriateness of strelka2 for tumour vs. tumour comparisons

#192 TBradley27 opened 3 years ago
0
Can I use Strelka for 10X genomics data?

#191 vahidAK opened 3 years ago
0
How can I install strelka2 on MacOS?

#190 jdjdj0202 opened 3 years ago
0
jsoncpp compilation error with gcc 7

#189 dunatotatos opened 4 years ago
0
Single Diploid Sample Analysis and Joint Diploid Sample Analysis

#188 wangjiawen2013 opened 4 years ago
0
Update quickStart.md

#187 KatharineME opened 4 years ago
0
Option to supply ploidy VCF file for somatic workflow?

#186 gijsschroder opened 4 years ago
0
forceGT option for Manta SVs?

#185 jjfarrell opened 4 years ago
0
QC filters on strelka2 output vcf

#184 yj-rainning opened 4 years ago
0
error in configureStrelkaGermlineWorkflow.py

#183 BIjoy92 closed 4 years ago
0
Strelka2 for asexual diploids?

#182 ghost closed 4 years ago
0
QSS details

#181 jjyotikataria opened 4 years ago
0
starling2 Segmentation fault

#180 bingreily opened 4 years ago
0
Strelka2, problematic GT field. GT:1

#179 iranmdl opened 4 years ago
2
INDEL calls instead of SNVs at neigboring loci

#178 axelgschwind opened 4 years ago
0
Can not install Strelka through Conda on Macos

#177 genesolutions opened 4 years ago
2
Empty VCF

#176 vymao opened 4 years ago
3
Which read count column should I use

#175 beginner984 opened 4 years ago
0
Allele frequency for SNV strelka2

#174 ruhollah2 opened 4 years ago
0
No genome regions to analyze. Possible target region parse error.

#173 geeky-369 closed 4 years ago
0
CONFIGURATION ERROR:

#172 parvathisudha opened 4 years ago
0
Strelka2 and PacBio HiFi reads

#171 sjin09 closed 4 years ago
1
Uncompressing reference block

#170 ghost opened 4 years ago
0
Statistic TumorSampleAltAlleleFraction is truncated

#169 tdelhomme opened 4 years ago
2
Days spent on chomId_006_chr7_0013

#168 annahoge opened 4 years ago
4
Germline EVS training

#167 DiDeoxy opened 4 years ago
0
no variants - wgs data

#166 StephanHolgerD opened 4 years ago
4
multipile threads (CPU) are not executed?

#165 jun3234 opened 4 years ago
0
Mac OS catalina: could not install Strelka and run demos

#164 hawkibo closed 4 years ago
4
Extracting some information from Strelka vcf

#163 beginner984 opened 4 years ago
2
problem to use boost version 1.72.0

#162 golubnikova opened 4 years ago
1
setting variant allele frequency in Strelka2

#161 yn2318 opened 4 years ago
0
xargs to call python executable to process multiple bam files

#160 ghost opened 4 years ago
0
--callregions bed file requirements

#159 RichardCorbett opened 4 years ago
0
Strelka parameters on targeted amplicon panels, single mode (only tumor sample).

#158 evelingonzalezfeliu opened 4 years ago
0
Calling mitochondria DNA variants setting

#157 freedomq8 opened 4 years ago
0
Python 3 support?

#156 alanhoyle opened 5 years ago
7
filter somatic calls by strand bias

#155 qindan2008 opened 5 years ago
0
PASS Variants Can Have Allele Frequency Exactly Zero

#154 DarioS opened 5 years ago
1
Somatic Variant Frequencies Differs By Only One Percent

#153 DarioS opened 5 years ago
0
Basecall Quality Score Too High Error

#152 DarioS opened 5 years ago
0
LowGQX despite great QUAL and ADs

#151 ntm opened 5 years ago
0
Workflow Configuration Option to Proceed Past Chromosome Mismatches

#150 DarioS opened 5 years ago
0
Reporting multiple alternate indels at the same position, the second ALT with 0 supporting reads?

#149 ivan-mh opened 5 years ago
0
Strelka variant found where there is no coverage

#148 osowiecki opened 5 years ago
2
How to detect somatic mutations with allele frequencies lower than 0.05?

#147 DavidAustinNix opened 5 years ago
1
Multiallelic somatic variants

#146 SebastianHollizeck opened 5 years ago
0
Explanation of Parallelisation Missing

#145 DarioS opened 5 years ago
0

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