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I want to get gnomad211,and I run`annotate_variation.pl -downdb gnomad211 humandb -buildver hg19`
but
`NOTICE: Web-based checking to see whether ANNOVAR new version is available ... Done
NOTICE: D…
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Hi,
I'm a new to annovar, this is a excellent tool. I tried to use annovar to annotate my mutation called from **_WES data_**. could the 1000 Genomes Project dataset be used to annotate mutation cal…
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Greetings,
Firstly, hats off to the amazing work.
I've been trying hard to download the database hg38_gnomad40_genome but every time it fails. Had tried almost 10-20 times using Google Chrome,…
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Dear Irina,
I got an error in the 3rd step when I had to convert VCF files to emaf file.
I used this command:
`perl ${ISOWN_HOME}/bin/run_isown.pl ./annovar_results ./isown_results/test.outpu…
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Dear Prof. Wang,
What situation will cause ANNOVAR take a variants as "invalid_input" ?
**If ANNOVAR encounters an invalid input line, it will write the invalid line into a file called .invali…
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Hi Developers,
I meet some error when runing ssva. I thinks this may be a bug, so I need you help.
I run command as below:
$ **java -jar /work/Software/SSVA-1.0/target/SSVA-1.0-jar-with-dependenc…
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joni@mpi1:~/ASIAT/DNA$ bedToBam -i /home/joni/ASIAT/DNA/56001801066357A.snp.vcf -g /mpi3/S5/annovar/humandb/refGene.txt > kani1snp.bam
joni@mpi1:~/ASIAT/DNA$ samtools view kani1snp.bam
[main_samview…
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Hello,
I have run table_annovar.pl with vcf input, but during the process, accidently removed my raw vcf file, which the code could not generate multianno.vcf.
Is there a way to change txt to vc…
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I'm getting an error trying to install/run `genesysv`. After following the installation examples the following code is _partially_ working. I'm able to open but something in the error isn't loading th…
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I am sorry, if I am asking too simple question but after reading read-me file, I am bit confused by the term unpaired data because I am using pair-end data in fastq file and finally after completion o…