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I am running monocle 2 to analyse some scATACseq data.
When I run:
data_atac
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Being a vim user I was using [rest.nvim](https://github.com/rest-nvim/rest.nvim), it covers my day to day usage except for few cases like file upload. So was always looking for a lightweight alternati…
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Hello,
Thanks for this very useful package!
I just have a few questions after runnning on single-cell ATAC-Seq libraries generated from the 10X multiome kit. I ran using the following commands:
…
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Hello,
I am very interested to use this tool in my work! I wondered if we had four different biological samples for 10X Multiome (which I've integrated using scRNA and Seurat's integration pipeline),…
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I updated my ATACS to the latest commit and attempted to rerun some old LPN files that I got working a couple of days ago. Now, the LPN files that use to work are producing errors. This is the message…
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I am wondering if you have a step-by-step guide, clearly written to find ATAC-QTL? I find it difficult to use the tool to analyze based on the current documentation provided..
Thank you.
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Hello,
Thanks for developing this great software. It has helped me a lot for integration of unpaired snRNA and snATAC. I recently run another dataset with my previous script following the scglue tu…
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10x atac-seq data does not have UMI. Souporcell gives:
```
Traceback (most recent call last): File "/opt/souporcell/souporcell_pipeline.py", line 104, in assert float(num_umi) / float(num_read_te…
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Hello! I am working with some ATAC samples and I wanted to integrate them using the IntegrateLayers function. I am using Seurat V5 and Signac for the processing of the samples.
I create a unified s…
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