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Having just started to work on pileup.js, I'm trying to understand the best workflows to use. Some snags I've hit that imply questions about whether there are better ways:
- there doesn't seem to be a…
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Here is a zoomed-in view of a region (snapshot of a web browser view). At the bottom, there is a `horizontal-transcripts` track showing Gencode v28 annotations, and we are at a scale where the protein…
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Hi! Excellent work on MoMI-G.
I have a problem using MoMI-G. I am trying to use MoMI-G on my own data, and I am following the instructions in the [manual](https://momi-g.readthedocs.io/en/latest/qui…
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It would be useful to be able to hide a track to prevent it from taking up any screen real estate, without the need to reload it to display it again. Especially great for creating sessions will all r…
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When initally running `gemBS extract`, I do not see any variants in the `_snps.txt.gz` files.
The gemBS config refers to the following Reference and DBSNP:
```
...
reference = ${root}/ref/huma…
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Hello,
Thanks for writing such a great tool!
I encountered a minor issue just now in which the GTF file output by the "-C" option has a few concatenated lines - e.g:
`chr1 HAVANA exon 9889097…
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Hi,
I'm trying to run lncLOOM with the '-eclip' option but I need the narrowPeak data first. Is '/home/caroline/eCLIP/narrowPeakApr2019' a folder of all ENCODE Narrow peak files in bed format or is …
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Tracking whether file-like objects could be supported by the different tiles implementations.
🟩 = yes, 🟨 = unknown, 🟥 = no
#### 🟨 [`bam.py`](https://github.com/higlass/clodius/blob/develop/clo…
manzt updated
2 years ago
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I think we still have tools in distribution that would profit from being migrated to the TS. What do others think?
e.g.:
https://github.com/galaxyproject/galaxy/pull/588
Tools in the distributi…
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It would be nice if BED files with less than 12 columns could be read.
For example if in BEDReadOptions, you can specify how many of the BED columns follow the spec.
Additional columns could be re…
ghuls updated
2 months ago