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Hi! Thanks for the amazing tool, I'm working with snATAC-seq pseudobulk data and realised that the bound regions between clusters that express vs other(s) that don't express a given TF is not as big a…
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## Overview
Although Series 4 is the current _de facto_ series of interest, there seem to be some open questions regarding series 3 (S3). For example, it is still unknown which target is hit by se…
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Hi there,
Appreciate the nice package,
Could you please add the axolotl genome, one of the most amazing regenetive animals ?
Both the genome assemble (AmexG_v6.0-DD)
the gene annotation (AmexT_…
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In the script `makefiles/05_integration.mk` I implemented the clustering of all the motifs discovered for a given TF, across all the data types. These give us an interesting selection criterion by ev…
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Hello,
Running into some issues where the program seems to be accessing a web resource/database (?) for retrieving sequences. I'm running on my cluster where the job nodes do not have external netwo…
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**Describe the bug**
I am following the description of the full interactive pipeline as detailed [in this notebook](https://github.com/aertslab/pySCENIC/blob/master/notebooks/pySCENIC%20-%20Full%20pi…
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10/27/21
1. can we use variant-containing sequences as test data?
2. profile vs counts information?
answer: probability output, total counts, if multiple two then come up with per base counts, as…
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This work follows #48
Following my matching up structures with their _in vitro/in vivo_ data and LogD data, this is an update on my preliminary SAR for our compounds so far.
I tried to further …
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Hi,
I am trying to run ananse (pip virtual environment; last updated yesterday) on a 64thread / 110G RAM machine. While ananse binding runs fine, ananse network progresses up to ~95% of network con…
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### Contribution guidelines
- [X] I've read the [contribution guidelines](https://github.com/squidfunk/mkdocs-material/blob/master/CONTRIBUTING.md) and wholeheartedly agree
### I've found a bug and …