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jvanheld
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IBIS_2024
Participation to the IBIS nebchmarking for motif discovery approaches
GNU General Public License v3.0
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run all analyses for the final board
#24
jvanheld
closed
1 week ago
0
Automatize the selection of matrices to be submitted
#23
jvanheld
closed
1 week ago
1
Make this gitlab repository available on Zenodo
#22
jvanheld
opened
2 weeks ago
0
Establish submission strategy
#21
jvanheld
opened
2 weeks ago
1
TF versus others for peak-motifs
#20
jvanheld
closed
1 week ago
1
optimize matrices according to their capability to discriminate a positive from a negative dataset
#19
jvanheld
closed
1 week ago
1
align optimized matrices with initial matrices using compare-matrices
#18
jvanheld
closed
2 weeks ago
0
First submission of optimised motifs
#17
jvanheld
closed
2 weeks ago
0
TF versus others
#16
jvanheld
closed
2 weeks ago
0
optimize primary peak-motifs discovered matrices rather than clustered matrices
#15
jvanheld
opened
2 weeks ago
0
TF versus others
#14
jvanheld
closed
2 weeks ago
0
Submit first round of optimized motifs to IBIS leaderboard evaluation
#13
jvanheld
closed
2 weeks ago
0
task list
#12
jvanheld
opened
2 weeks ago
0
baseline solutions
#11
jvanheld
opened
1 month ago
5
IBIS Benchmarking protocol - some thoughts
#10
jvanheld
opened
1 month ago
4
matrix-clustering by TF
#9
jvanheld
closed
2 weeks ago
29
obtain consensus motifs with matrix-clustering
#8
brunocontrerasmoreira
closed
2 weeks ago
1
matrix-quality criterion
#7
jvanheld
closed
2 weeks ago
4
Peak center-depleted k-mers
#6
jvanheld
opened
2 months ago
2
BG model for oligo-analysis
#5
jvanheld
opened
2 months ago
0
Matrioskas approach
#4
jvanheld
opened
2 months ago
4
convert-seq -from fastq -to fasta
#3
jvanheld
closed
3 weeks ago
8
Peak-motif option to avoid purging
#2
jvanheld
closed
2 weeks ago
3
Datasets with no good motifs
#1
jvanheld
opened
2 months ago
2