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`read10Xresults` coming out in _scater_, use that instead of _cellrangerRkit_ in `prepareData.R`.
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```
Warning messages:
1: Can't find iSEE in webR binary repository.
2: Can't find scater in webR binary repository.
3: Can't find scRNAseq in webR binary repository.
4: Can't find curl in webR bi…
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Different ways to set Bioconductor version and CRAN packages:
tools:::.BioC_version_associated_with_R_version() vs BiocManager::version()
And also the note about how to make it available at startu…
llrs updated
4 months ago
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### Description of feature
Currently we grab data from bioconductor's AnnotationHub. This is very convenient, but we're grabbing uncompressed sqlite files. When bioc distributes these files as packag…
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Hi @LTLA ,
Basilik is currently timing out in both release and devel on the BioC build system (http://bioconductor.org/checkResults/release/bioc-LATEST/basilisk/).
This is preventing the propaga…
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Hi Dear METACLUSTER developer,
I tried to install METACLUSTER using the following script:
`install_github("https://github.com/mbanf/METACLUSTER", build_vignettes=TRUE,
repos=c("http://cran.rstu…
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biomart is dead? https://support.bioconductor.org/p/p133350/
https://bioconductor.org/packages/release/bioc/html/biomaRt.html
https://github.com/ropensci/biomartr
https://docs.ropensci.org/restez…
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`{rsdmx}` is an existing library exists to parse/read SDMX data and metadata in R. See here: https://github.com/opensdmx/rsdmx
This package is extensive but not tailored for use by Pacific Stati…
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When install ShortRead by BiocManager::install(), and R version is 4.2.1, this package is not successful installed, and detail is as follow:\
`installing to /home/xinzhepang/R/x86_64-pc-linux-gnu-lib…
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### Running command:
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### /ho…