Bioconductor basilisk issues

Bioconductor / basilisk

Clone of the Bioconductor repository for the basilisk package.

https://bioconductor.org/packages/devel/bioc/html/basilisk.html

GNU General Public License v3.0

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issues

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Installation of basilisk under R 4.4.1 fails

#43 joachimt1 opened 1 week ago
11
feature request: mamba

#42 nick-youngblut opened 1 month ago
7
How to change the conda mirrors managed by Basilisk?

#41 chenxing-zhang opened 2 months ago
1
Force basilisk to ignore .condarc and only use specified channels.

#40 LTLA opened 2 months ago
0
Clarified documentation around paths= for local Python packages.

#39 LTLA opened 3 months ago
0
Commented on the licensing problems with the defaults channel.

#38 LTLA closed 3 months ago
3
Unable to find reticulate function in fallback environment

#37 csoneson closed 4 months ago
4
adjusting DESCRIPTION and one function that uses library() to avoid warning

#36 vjcitn opened 5 months ago
0
centralize external package references and block an apparent error in son.of.basilisk

#35 vjcitn opened 5 months ago
2
updates to external package version numbers

#34 vjcitn closed 5 months ago
0
typo in test-install.R

#33 vjcitn closed 5 months ago
1
Warning message: In install.packages(...) : installation of package ‘basilisk’ had non-zero exit status

#32 AlbertSL98 opened 7 months ago
1
Add 'full.activation' arg to useBasiliskEnv/basiliskStart/basiliskRun.

#31 hpages closed 7 months ago
0
load reticulate on fallback earlier and w/o env

#30 mbstadler closed 7 months ago
4
undefined symbol: PyType_GetFlags

#29 serge2016 closed 9 months ago
1
Error loading shared libraries in basilisk

#28 ChangqingW closed 9 months ago
4
The environment variable `PIP_USER=true` leads to incorrect installations

#27 mtmorgan closed 12 months ago
1
Explicitly attach reticulate from the right library

#26 csoneson closed 1 year ago
0
Timeout in tests

#25 grimbough opened 1 year ago
1
Error in installConda() : conda installation failed with status code '2'

#24 maqingyue opened 1 year ago
16
Use Python 3.10 for the motivation vignette

#23 martin-g closed 1 year ago
4
`CMD build` failure on Linux ARM64

#22 martin-g closed 1 year ago
4
Fall back to the internal R upon encountering a GLIBCXX error.

#21 LTLA closed 1 year ago
0
Error on basilisk env for spatialDE wrapper

#20 davidecrs opened 1 year ago
15
choose python version

#19 karltayeb closed 1 year ago
2
Basilisk Conda Env issues on Mac M1

#18 dbdimitrov closed 1 year ago
22
`setupBasiliskEnv`: Allowing >/<

#17 bschilder closed 2 years ago
2
using basilisk on GitHub Actions

#16 bschilder opened 2 years ago
9
python version forced using radian

#15 alanocallaghan closed 2 years ago
3
How to update an existing basilisk environment

#14 keller-mark closed 1 year ago
1
Error: invalid connection

#13 snikumbh closed 1 year ago
6
Status of basilisk on 32-bit Windows

#12 hpages closed 3 years ago
2
Settling down

#11 jan-glx closed 2 years ago
2
Problems installing `basilisk` 1.3.6

#10 csoneson closed 3 years ago
4
notice on pip changes/2020-resolver

#9 vjcitn closed 3 years ago
2
installAnaconda -> installMiniconda

#8 Jfortin1 closed 4 years ago
1
Actually activate conda environments before use

#7 LTLA closed 4 years ago
0
Unable to find conda binary. Is Anaconda installed?

#6 kieranrcampbell closed 4 years ago
19
Run python code in an environment specified by absolute path

#5 Jfortin1 closed 4 years ago
3
Persistent processes

#4 LTLA closed 4 years ago
0
Fix subtle dependency bug

#3 LTLA closed 4 years ago
1
Checking in

#2 LTLA opened 4 years ago
32
Feasibility check

#1 LTLA closed 4 years ago
47