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### Description of feature
Could be good to do whatever can be done when we release to help prepare for validation.
I'm thinking benchmarking, GiAB, checking results...
Could be interesting to talk…
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- [ ] Look at the [list](https://docs.google.com/spreadsheets/d/1wNtmceBQwZu71gmQ1Z48yqNdV0zNu9WfZJ5IAhoRnMw/edit#gid=845169585) of data types cohorts are collecting and determine existing nextflow/CW…
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Hi there,
Is it possible to obtain a code coverage report for Nextflow scripts using nf-test? If not, would you have any alternative suggestions?
Many thanks in advance!
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Hi users,
I'm wondering if anyone might be interested to implement AnnotSV in Python?
Then our users community could easily contribute towards it:
- Bugs could be tackled efficiently
- New ideas…
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Hi,
I`m running anvio-8 to do assembly and binning. I can successfully submit the job script with no errors but it fails after a few seconds. There is no error in the output file so I`m really conf…
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The current pipeline will need to be modified a fair bit to account for changes between EPPIC 2 and 3. EPPIC 3 differs in config file location, parameters, output directory layout, and jetty setup, to…
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There seems to be sufficient and widespread interest for this:
https://twitter.com/KMS_Meltzy/status/1118613260138369024 (note epic Twitter thread)
As it happens, this also showcases some of the…
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- [ ] CHOP RNASeq BixOps Automation. [JIRA](https://sagebionetworks.jira.com/browse/IBCDPE-476)
- [x] Reach out to CHOP to get answers about their BixOps process to trigger the process manually. [J…
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Dear nipype developers,
I am using nipype and I was wondering how 2.0 is progressing. I am addressing this here, because I could not find a better way, so I hope that is fine.
According to the…
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It would be nice to be able to have bash interpretor (like they have it in Zeppelin) because for many tasks running the command in bash is still the fastest option to get things done