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For distributed computing I usually start up about 500 julia (version 1.9.0 on linux) workers, which share the same filesystem. After the switch from version 1.8.5 to 1.9.0 about 5% of the session exi…
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I think it would be useful to add a recommendation regarding the naming of getters and setters to the style guide here: http://docs.julialang.org/en/latest/manual/style-guide/#use-naming-conventions-c…
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So the design of BioSequences makes it difficult to implement efficient and correct hashing.
We want efficient hashing, because hashing underlies operations like putting stuff in a `Set` or `Dict`, w…
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Hey,
we moved from conda-forge to Bioconda -> https://github.com/scverse/scanpy/issues/1169
Unfortunately, this comes at a cost which is highly relevant for pipeline building. nf-core wants to a…
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Hola a todos,
Este mensaje tiene como objetivo empezar a definir los proyectos de fin de curso. El proyecto final, como lo dije en clase, consistirá en desarrollar un tema **en equipo** y en la pre…
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https://github.com/BioJulia/FASTX.jl/blob/868d702ef8bb93c8e91f3d96507c8cfc4d7188c0/src/fasta/index.jl#L230-L234
Why does this code use the internals of `TranscodingStreams`?
I will soon remove t…
nhz2 updated
5 months ago
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This is the early planning of a new course "uncool full stack development" or something similar. Basically, I want to show people how to use simple broad-purpose tools, rather than SAAS and complex st…
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The spec points here: https://github.com/modENCODE-DCC/validator/blob/master/new_gff_validator.pl
This is 7 year old perl code
The SO wiki has:
http://www.sequenceontology.org/so_wiki/index.php…
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Hi there,
I cannot add Gtk package in my 1.0.0 version julia and below are some more infos. Anyone can help?
Thank you.
Zd
`julia> versioninfo()`
>Julia Version 1.0.0
Commit 5d4eaca0c9 (…
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The efetch function is giving me errors when I run the following command:
where request_str is a array of pmids.
EUtils.efetch(db = "pubmed", tool = "BioJulia", retmode = "xml", rettype = "null…