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I recently tried to install Begum at our RedHat cluster and I got the following error:
`ImportError: Bio.Alphabet has been removed from Biopython. In many cases, the alphabet can simply be ignored…
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@jbloom and I are happy to answer general questions about the biopython. For questions on homework 6, please use #34
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The alignment commandline wrappers via Biopython are deprecated and will be removed in a future version.
This means that the use of the clustalw wrapper in `align.py` will no longer work once this …
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Staphilococcus pyogenes Cas9 has an NGG PAM, but Staphilococcus aureus Cas9 has an NNGRRT PAM. While N means any nucleotide, R means A or G. We should support this notation so users can input a human-…
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See: https://github.com/biopython/biopython/blob/master/Bio/Alphabet/__init__.py
What to do here?
ms-gx updated
4 years ago
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The old MediaWiki page had http://biopython.org/wiki/Special:AllPages in the sidebar which was useful when browsing the content, and for ensuring search engines found everything. For now we can browse…
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Hi,
I have a conda install of biopython that works brilliantly (I'm using `biopython=1.76=py38h516909a_0`). However, I did not have any luck finding the corresponding [biocontainer](https://quay.io…
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I checked all the links and what is there seems correct. Is it complete? I think there are automated tools for discovering dependencies.
https://github.com/biopython/biopython.github.io/blob/master/wi…
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As suggested by Markus Piotrowski
Checklist:
1. Title
- The title in the markdown file may be changed into something more user-friendly (https://github.com/biopython/biopython.github.io/issues/22)
- T…
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Hello
I have this error while trying to run the program
phagecom
Traceback (most recent call last):
File "/Users/emmannadi/miniconda3/bin/phagecom", line 5, in
from phagecommander.phagec…