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## Summary
Implement error handling in the `GetBridgeDBInstance` function to handle cases where the `bridgeDB` object is nil.
## Problem Definition
Currently, the `GetBridgeDBInstance` fu…
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When producing the Docker image with a selected group of species, the swagger interface should only show the species that are loaded. The swagger.json file should be set up dynamically
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The current output looks like:
```
DATASOURCEVERSION 85
DATATYPE GeneProduct
SERIES Homo sapiens genes and proteins
DATASOURCENAME Ensembl
BUILDDATE 20161019
SCHEMAVERSION 3
```
Th…
egonw updated
4 years ago
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Since some time, we have PWs with identifiers on the edges, see for example [WP4518](https://www.wikipathways.org/index.php/Pathway:WP4518) . If these IDs could be added as an additional column(s) (Xr…
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At this moment I do not have clear yet what the data model is going to be. These things come to mind at this moment:
- died identifier
- when the identifier died
- type of identifier: dead, zombi…
egonw updated
2 years ago
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For example, the RVIS measure from Petrovski et al [1] assesses a gene's intolerance to genetic variation based on the ESP project. I also recall a poster from Mark Daly's lab at Biology of Genomes t…
arq5x updated
11 years ago
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To whom it may concern,
When running the statistics function over Wikipathways downloaded pathways, it throws the following error
![pastedImage](https://user-images.githubusercontent.com/8264077…
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I want collect ideas for a tool which automatically adds more meta data.
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under `org.bridgedb.webservice.synergizer` we include `lib/synergizer.jar` as a `system` dependency, so anyone using this module would also need to add synergizer.jar to their own class path.
I tri…
stain updated
7 years ago
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Regarding the documentation below:
- [ ] How can people register new data sources, from within PV? (I actually don't think we would want that...)
- [x] "is given priority"; how? For the dropdown men…