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Hello Brian,
I tried to run the tutorial but got an error message in the first step (using Docker):
```
${STAR_FUSION_HOME}/FusionFilter/prep_genome_lib.pl \
--genome_fa minigenome.fa \
…
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Hi,
I'm trying to run FusionInspector for a set of probable fusion genes. I'm using STAR-Fusion version: 1.10.0; FusionInspector version: 2.5.0; STAR version: 2.7.8a and the reference genome is GRC…
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Hi!
I'm trying to run STAR-Fusion with the coding effect option. Here is the command that I ran:
```
cd /fs/ess/PAS0854/Emily/kinase_fusions/head_neck/other_datasets/sartor_2022/SRR2932813/
…
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EXITING because of FATAL ERROR: could not open genome file `/diskmnt/Projects/Users/dcui/Projects/Fusion_hg38/Integrate_dependencies/STAR//genomeParameters.txt`
SOLUTION: check that the path to genom…
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I am running manta 1.6.0 with alignment output from STAR-Fusion's Aligned.out.sam after it is compressed to bam and sorted. The manta options for the configManta.py I used was
`--rna --bam Aligned…
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I followed the steps to download all the reference files to run, the first half showed that everything was fine, but there was an error in the STAR-fusion step.
Specific errors:Bio.Application.Applic…
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Hello! I am using STAR-Fusion to generate fusion transcripts for the RNA-Seq data of _Arabidopsis thaliana_
**I have first used the Ensembl Plants 51 (latest) version of gtf file and I could not ev…
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Hi!
I do not know if this is the right place to ask that but is there a way to update the RNA-editing resources found here (https://data.broadinstitute.org/Trinity/CTAT_RESOURCE_LIB/MUTATION_LIB_SU…
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Hi,
I have been trying to run STAR-Fusion on pair-end rRNA-depleted RNA-seq data on a machine with 3T memory for 3 days, and I haven't been able to finish the first run. This doesn't appear normal …
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Hi :),
I don't really understand this error I think it happens with the option --FusionInspector inspect and --denovo_reconstruct
"""
BAMoutput.cpp:27:BAMoutput: exiting because of *OUTPUT FILE…