Illumina manta issues - Githubissues

Illumina / manta

Structural variant and indel caller for mapped sequencing data

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Installation issue (possible bug - library_version_type/ libdeflate should be from source)

#313 hongsilv opened 1 year ago
0
Why is START and END the same in the diploidSV.vcf.gz?

#312 robertzeibich opened 1 year ago
0
Failure to call well-known fusions on WES samples

#311 maximus3219 opened 1 year ago
0
What is the benefit of the stats folder? Are some structural variants more relevant than others in the candidateSV.vcf file??

#310 robertzeibich opened 1 year ago
0
Manta currently handles paired-end (FR) reads only.

#309 hanqin580230 opened 1 year ago
2
No Quality of Filter scoring for haploid genome

#308 ABediSilva closed 1 year ago
0
--exome: command not found & bin/configManta.py: No such file or directory

#307 yr542 opened 1 year ago
0
Get STRAND INFO in the vcf output

#306 Sreelekshmi-291 opened 1 year ago
0
Problem finding .bed.gz.tbi index file with --callRegions

#305 lunalvan opened 1 year ago
0
Fixes #293

#304 riederd opened 1 year ago
0
merge the two lines translocation(BND) records into one line

#303 Qijie0615 opened 1 year ago
0
Population-scale SV merging does not produce 0/0 genotypes

#302 DomManou opened 1 year ago
0
How extract gene fusion information through manta`s output based on DNA-seq data

#301 dfc-1931475 closed 1 year ago
1
Add CI based on Github Actions

#300 martin-g opened 1 year ago
2
No reads passing filters for dragmap-aligned bams

#299 Rohan-Abraham opened 1 year ago
0
Error when running debugSingleSV

#298 wongwsw opened 1 year ago
0
Depth based exclusion process question

#297 hayeon-pak opened 1 year ago
0
Errors in MantaDemoAnalysis.py

#296 HeejunJang opened 2 years ago
0
Error: Unhandled Exception in TaskRunner-Thread-masterWorkflow

#295 georgiesamaha closed 1 year ago
1
Know SV can not detected by manta

#294 iskysinger opened 2 years ago
3
isEmail function in run script makes Manta hang

#293 holtgrewe opened 2 years ago
0
denovo_scoring.py extension - failure to read sample IDs in VCF

#292 McClatcheyM opened 2 years ago
4
[Question] How does Manta handle PCR duplicates?

#291 tbaker18 opened 2 years ago
1
Support pair-end 100 Pb sequencing data

#290 zhoudreames closed 2 years ago
0
[Question]: Is ARM64 architecture supported ?

#289 julien-faye opened 2 years ago
1
Filter bad-cigar reads in bam streamer

#288 fbattke opened 2 years ago
1
Versioning on conda

#287 dmaziec opened 2 years ago
1
The orientation of structural variations

#286 cauliyang opened 2 years ago
0
Split and spanning reads

#285 dmaziec opened 2 years ago
1
Increase the max allowed base Q score from 70 to 93

#284 clintval opened 2 years ago
0
Fail to open existing file

#283 elcortegano opened 2 years ago
2
Impossible to install manta-0.26.0

#282 NstVasileva closed 2 years ago
0
SV calling on chrMT

#281 marc-sturm opened 2 years ago
0
Does Manta support 10x linked-read sorted bam files?

#280 goldpm1 opened 2 years ago
3
No FORMAT field in the output vcf file

#279 Abusamra opened 2 years ago
0
Overlapping SVs occur in the same sample

#278 jxcao98 opened 2 years ago
0
Too many homozygous variants

#277 astulaaa opened 2 years ago
0
[ERROR] 'generateCandidateSV_0000' error code: 1

#276 zhiyongli1995 closed 2 years ago
1
[ERROR] Failed to complete command task: 'generateCandidateSV_0000' with taskExitCode -9

#275 Mirror-fish opened 2 years ago
3
Failed to complete command task: 'getAlignmentStats_generateStats_000'

#274 zetamui opened 2 years ago
3
[WorkflowRunner] [ERROR] Received termination signal, shutting down running tasks...

#273 siqi-zZ opened 2 years ago
0
[ERROR] Failed to complete command task: 'generateCandidateSV_0000' , error code: 1 in germline samples analysis

#272 HZAUzyz closed 2 years ago
1
Manta installation error

#271 Kh0iHuynh opened 3 years ago
0
No module named configBuildTimeInfo

#270 boboshaq opened 3 years ago
0
No python2 interpreter found

#269 boboshaq opened 3 years ago
0
conda : missing runWorkflow.py file

#268 manolis2023 closed 3 years ago
1
fail to run " python runWorkflow.py " and "GetAlignmentStats ERROR"

#267 lx-1011 opened 3 years ago
1
Clarification on variant IDs and EVENT tags

#266 kmegq opened 3 years ago
0
CMake configure incompatible with Boost CMake config files

#265 Flamefire opened 3 years ago
0
Invalid/problematic use of CMake variables in if-conditions

#264 Flamefire opened 3 years ago
0