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Illumina
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manta
Structural variant and indel caller for mapped sequencing data
GNU General Public License v3.0
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Tumor -only Analysis error
#263
heweihuang
opened
3 years ago
0
generateCandidateSV error: Unexpected split read alignment input condition
#262
jbalberge
opened
3 years ago
1
why my VCF file generated with manta is missing genotype information
#261
Giuseppe1995
opened
3 years ago
4
Does Manta detect fold-back inversions?
#260
weishwu
opened
3 years ago
0
Manta false negative large deletion - finds PR evidence but qual=0
#259
rhalperin
opened
3 years ago
0
1bp missmatch between BAM and reference genome
#258
Hywel-W
opened
3 years ago
0
false negative with no edges in svLocusGraph?
#257
rhalperin
opened
3 years ago
0
Manta does not support Python3.6.6 ??
#256
pkMyt1
opened
3 years ago
1
Manta cannot detect same chromosome large deletions
#255
jdzdroid
opened
3 years ago
7
Large Inversion interpretation
#254
davidvilanova
closed
3 years ago
0
Task status at 'generateCandidateSV_0000'
#253
Mkddb
opened
3 years ago
0
some question about output file candidateSV.vcf.gz
#252
ChenDepp
opened
3 years ago
0
Finished install but can't run the demo
#251
eeleclair
opened
3 years ago
2
germline SV calls: keep only PASS?
#250
cagaser
opened
3 years ago
1
Can't compile without sudo - can't link to libstdc++.a on custom directory
#249
lferreiraMD
opened
3 years ago
0
Permission Denied Error with convertInversion.py
#248
mdbjax
opened
3 years ago
2
Update on genotyping option?
#247
katherinef
opened
3 years ago
2
"ulimit -s unlimited" but got "Too many open files"
#245
lindenb
opened
3 years ago
3
Manta output merging
#244
nitha26
opened
3 years ago
1
estimate data (BAM format) processing time (manta 1.6.0)
#243
jeffchen2000
opened
3 years ago
0
Manta error with EstimateSVLoci on WGS bam
#242
ramsainanduri
opened
3 years ago
0
How to print out SR?
#241
hhzhongchn
opened
3 years ago
0
how to reduce too many result
#240
QuanLG
opened
4 years ago
0
output VCF missing "FORMAT" field?
#239
cnavery
opened
4 years ago
0
[ERROR] Failed to complete command task
#238
AlisaFbb
opened
4 years ago
1
Missing variants with high coverage WGS samples. How to capture the missed variants?
#237
ChristopheLegendre
opened
4 years ago
0
Ongoing convertInversion.py issue
#236
MaximilianStammnitz
closed
4 years ago
1
Failed to complete command task: 'generateCandidateSV_0000', error code: 1
#235
Boer223
opened
4 years ago
7
[ERROR] generateCandidateSV_0000 fails with taskExitCode -10
#234
savalipa
opened
4 years ago
0
Manta on Python3
#233
WKabza
opened
4 years ago
3
several sample have a signaficant higher SV numbers among groups
#232
wanhui5867
opened
4 years ago
0
Problems with --callRegions
#231
anfimoagbr
opened
4 years ago
1
ERROR: 'mergeLocusGraphInputList'
#230
AndreHolzer
opened
4 years ago
1
Build failed with internal htslib but succeed with external one
#229
ghost
opened
4 years ago
1
Depth and Allele frequency calculations
#228
Nitin123-4
opened
4 years ago
1
What level BAM should Manta be run on
#227
icanwinwyz
opened
4 years ago
2
influence of BED file on variant results
#226
djomlaart
opened
4 years ago
0
build fail on building htslib on macOS 10.15.4
#225
Billy-Nie
opened
4 years ago
0
Missing mutation in DiploidSV
#224
rohandavidg
opened
4 years ago
0
SEQ='*' error and how to solve it?
#223
temizna
opened
4 years ago
0
Question about inversion and problem with convertInversion.py script
#222
ptranvan
closed
4 years ago
0
TestAssembler no reference sequence
#221
fayina
opened
4 years ago
0
[generateCandidateSV_0000] [E::hts_open_format] Failed to open file
#220
moahaegglund
opened
4 years ago
2
python errors running convertInversion.py
#219
mooreann
closed
4 years ago
1
[generateCandidateSV_0000] ERROR: Failed to close BAM/CRAM file:
#218
AhmedArslan
opened
4 years ago
0
Another " Failed to complete command task: 'generateCandidateSV_0000' "
#217
Fred-07
opened
4 years ago
3
Failed to complete command task: 'generateCandidateSV_0000'
#216
azzatha
opened
4 years ago
4
Metric for evaluating the confidence of CNV variants
#215
HyunjunNam
opened
4 years ago
0
ERROR: Manta workflow must be installed prior to running demo
#214
anupullanhi
closed
4 years ago
0
Running Manta with WGS data takes a lot of time
#213
zhaoxia-genedock
opened
4 years ago
4
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