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Illumina
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manta
Structural variant and indel caller for mapped sequencing data
GNU General Public License v3.0
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generateCandidateSV taskExitCode -11
#212
bryce-turner
closed
4 years ago
2
Reference genome mismatch: Reference fasta file is missing a chromosome found in the Normal BAM/CRAM file: 'ERCC-00002'
#211
azzatha
opened
4 years ago
1
SV output from Manta - unknown symbol for variant type
#210
azlinIMR
opened
4 years ago
0
SVs shared by tumor and normal samples
#209
ivanbelzen
opened
4 years ago
0
SR support?
#208
woodoo46
opened
4 years ago
0
how to map reads and get bam for manta
#207
YaqiangCao
opened
4 years ago
0
How to annotate the somaticSV.vcf file?
#206
pandafish123
opened
4 years ago
2
Some reported SV events has 0 support reads
#205
TendoLiu
opened
4 years ago
1
RnaSeq splice variant
#204
gudeqing
opened
4 years ago
0
Failed to open chrom depth file
#203
lzyskyline
opened
4 years ago
0
forcedGT option
#202
jjfarrell
opened
4 years ago
0
INFO/EVENT
#201
Teuira
opened
4 years ago
0
configManta.py unrecognized argument
#200
TendoLiu
closed
4 years ago
1
Manta never finish on a merged bam file.
#199
AJ2802
closed
4 years ago
2
which outputs should I choice?
#198
weikai320722
closed
4 years ago
1
Assertion `insertSize || deleteSize' failed
#197
icelu
opened
5 years ago
0
Output only in stats folder but not in evidence and variants folders
#196
oflorez
opened
5 years ago
1
Filter/Intersect Manta SV's to target ROI (Region of interest) bed file
#195
gopi1616
opened
5 years ago
1
Can Manta be used for haploid genome?
#194
souravnayak
closed
5 years ago
1
Two different SV calls overlapping the same genomic fragment (IMPRECISE flag)
#193
JuanmaMedina
closed
5 years ago
1
Feature request: joint somatic DNA + RNA mode
#192
iskandr
opened
5 years ago
1
How to get reads supporting REF allele in evidence BAM?
#191
bishwaG
closed
5 years ago
2
QUAL value missing in only-tumor model
#190
shiwanyin
closed
5 years ago
2
Miscalling of HomRef?
#189
weishwu
opened
5 years ago
1
Inconsistent sample naming
#188
drmjc
closed
5 years ago
2
fail to build on centos 7
#187
jmercier-lbi
closed
5 years ago
1
missing calls for areas of no coverage ?
#186
webbchen
closed
5 years ago
1
Feature request: overriding `Reference genome mismatch` error
#185
evanbiederstedt
opened
5 years ago
2
Unclear how to deal with CIGAR strings with InDels at the end of reads
#184
evanbiederstedt
closed
5 years ago
4
missing INV
#183
C4t3
closed
5 years ago
1
Check and fail if input reference is gzip compressed
#182
KamilSJaron
opened
5 years ago
6
resume interrupted execution.
#181
Hang0918
closed
5 years ago
1
Python2 is EOL soon - please switch to Python3
#180
tillea
opened
5 years ago
2
Manta error in test running demo
#179
Max-Chao
closed
5 years ago
1
Converting manta original output
#178
beginner984
closed
5 years ago
1
anything wrong about my data?
#177
ggoodstudydaydayup
closed
5 years ago
1
Execute Manta on specific chromosomes
#176
daormar
closed
5 years ago
2
VCFv4.2
#175
curtisjamison
opened
5 years ago
3
manta compile error
#174
huangl07
closed
5 years ago
1
I wonder If Manta can be used to run Mate pair sequencing data instead paired end?
#173
unique379r
closed
5 years ago
2
Is it safe to remove "share/demo" from the binary release?
#172
SHuang-Broad
closed
5 years ago
2
generateCandidateSV Error: Unexpected alignment name collision
#171
CWYuan08
closed
5 years ago
7
runworkflow.py returns error
#170
shannjiang
closed
5 years ago
2
Crash on complex indels at read end
#169
mozack
closed
5 years ago
1
FATAL_ERROR: Can't determine consensus pair orientation of read group
#168
MagdalenaFeldhahn
opened
5 years ago
15
Unexpected split read support
#167
ohofmann
closed
5 years ago
2
Unreachable link in 1.5.0 release note
#166
SHuang-Broad
closed
5 years ago
2
multi-sample genernate pipeline
#165
huangl07
opened
5 years ago
13
error workflow generate
#164
huangl07
closed
5 years ago
1
Update README.md
#163
jakewendt
closed
5 years ago
1
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