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Hello,
In figure 6 of your paper you demonstrate that M3C can generate a dendrogram to show hierarchical structure. I've found a previous M3C manual (1.41, April 2019) that shows that there was an …
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Hello,
I am very honored to read this paper.The idea of this article has deeply attracted me.But I don’t understand the hierarchical community built in the article.After removing the edge with the hi…
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The default dendrogram plots are very condensed when the number of tips gets above 25 or so. For example (from [IAB multiple sequence alignment chapter](http://nbviewer.ipython.org/github/gregcaporaso…
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The helper methods for calculating `depth` needs to be fixed.
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Hi,
Using Quarto, I usually have no problem to display the result of my clustering with `rainette_plot()` and to integrate the plot in the html rendering.
For code management reasons, I decided …
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So as the title says. Vertical dendrogram(not column) I can manipulate by changing heatmap_part_width. As I can see right now, there's no way I can change height of column_dendrogram. Or am I missing …
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Since the dendrogram is a binary tree, the current implementation of `AgglomerativeClustering` cuts the dendrogram at a particular level based on a user-provided parameter `n_clusters`. This can be us…
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Tried with basic graph and got this error -
File "/Users/kaitlinpet/Desktop/Projects/network-composition/flaskapp/comm_det.py", line 50, in
group['children'] = [x for x in group['children']…
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The following issue occurs when running the function sc.pl.rank_gene_groups_heatmap (as in the spatial transcriptomics tutorial found at https://scanpy-tutorials.readthedocs.io/en/latest/spatial/basic…
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Successfully rendering dendrogram viz in 5.5 kibana. But when queries or filters are applied or un-applied, duplicate dendrograms spawn beneath the original. There a quick way to disable this in the…