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biocore
/
gneiss
compositional data analysis toolbox
https://biocore.github.io/gneiss/
BSD 3-Clause "New" or "Revised" License
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Numpy 1.24 incompatibility
#298
mortonjt
opened
1 year ago
0
MAINT: update euclidean for scipy 1.9
#297
ebolyen
closed
1 year ago
1
ImportError: cannot import name 'balanceplot'
#296
Learnerhua
closed
2 years ago
2
match and match_tips functions are deprecated
#295
mortonjt
opened
2 years ago
0
Faster hierarchical clustering
#294
mortonjt
opened
3 years ago
0
bump
#293
mortonjt
closed
3 years ago
4
Enable github actions
#292
mortonjt
closed
3 years ago
0
Fixing sparse matching
#291
mortonjt
closed
3 years ago
1
BUG: match appears to be broken with biom tables
#290
mortonjt
closed
3 years ago
0
Renaming clades
#289
mortonjt
opened
3 years ago
1
WIP adding xarray match tips function
#288
mortonjt
closed
2 years ago
1
Compatiability with xarray
#287
mortonjt
opened
3 years ago
0
Faster random_linkage method
#286
mortonjt
opened
3 years ago
0
Proportionality test
#285
mortonjt
opened
3 years ago
1
Tutorials for proportion plots
#284
mortonjt
opened
4 years ago
0
Version bump
#283
mortonjt
closed
4 years ago
0
MAINT: update reindex_axis for pandas 0.25.1
#282
ebolyen
closed
4 years ago
5
Balance test
#281
mortonjt
opened
4 years ago
1
MAINT: stop using deprecated pandas reindex_axis
#280
thermokarst
closed
4 years ago
2
Post release commit
#279
mortonjt
closed
5 years ago
1
Upgrading numpy version
#278
mortonjt
closed
5 years ago
5
Update the pip and bioconda version 0.4.4 to require skbio ≥ 0.5.1 instead of == 0.5.1
#277
jolespin
closed
4 years ago
3
phyloseq support
#276
davidvilanova
opened
5 years ago
1
numerator cutoff is slightly off in proportion_plot
#275
mortonjt
opened
5 years ago
2
pvalues disagree between interactive plot
#274
mortonjt
opened
5 years ago
0
ENH: upgrade numpy
#273
mortonjt
closed
5 years ago
2
Addressing #270
#272
mortonjt
closed
5 years ago
3
Addressing #270
#271
mortonjt
closed
5 years ago
0
Sign change in ilr_transform results using new dependencies
#270
thermokarst
closed
5 years ago
3
Getting None/NaN values in columns from `gneiss.composition.ilr_transform`
#269
jolespin
closed
5 years ago
2
Composition docs
#268
mortonjt
closed
5 years ago
1
added ilr_phylogenetic
#267
qiyunzhu
closed
5 years ago
2
Update _decompose.py
#266
lisa55asil
closed
5 years ago
2
Update _composition.py
#265
lisa55asil
closed
5 years ago
2
TODO:
#264
mortonjt
opened
5 years ago
0
Gneiss Maximum Recursion Depth Error
#263
mortonjt
opened
5 years ago
0
[Question] How to correctly use ILR with balance tree basis?
#262
mortonjt
opened
6 years ago
5
ImportError: cannot import name 'balanceplot'
#261
jolespin
closed
2 years ago
3
Tight integration with patsy
#260
mortonjt
opened
6 years ago
0
Updated tutorials
#259
mortonjt
closed
6 years ago
1
Updated tutorials
#258
mortonjt
closed
6 years ago
1
FIX: Adding in option to download FDR pvalues
#257
mortonjt
closed
6 years ago
2
Enable download for FDR pvalues
#256
mortonjt
closed
6 years ago
0
WIP: Poisson regression
#255
mortonjt
closed
6 years ago
1
Simulation
#254
mortonjt
closed
5 years ago
0
Sparse utils
#253
mortonjt
closed
6 years ago
8
Missing documentation for latest release
#252
ElDeveloper
opened
6 years ago
1
problem with balance labels in lme regression?
#251
tanaes
opened
6 years ago
0
Sparse ilr
#250
mortonjt
closed
6 years ago
2
pycodestyle fixes
#249
mortonjt
closed
6 years ago
1
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