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For a while, we have been avoiding `Protein Group` modelling in the psm and feature in the format. @jpfeuffer triggered this issue a long time ago. Our main tools DIA-NN, OpenMS TMT, and OpenMS LFQ pi…
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Dear Support Team,
I started using DIA-NN version 1.9 and see an issue with exporting results directly to my shared drive. Unlike version 1.8.1, which allowed me to write the results to shared files …
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The parquet file seems to be missing a couple of columns from the report tsv including "File.Name" and "First.Protein.Description". Could these be added to the parquet file?
Could there be an updat…
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I want to convert the predicted HLA peptides into a speclib with peptdeep & run it in DIA-NN. Is there an option to include the protein name/ FASTA header in the output when doing this?
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Hi Fengchao,
I'm trying to set up a DIA_SpecLib_Quant proteomic workflow using the latest versions of FragPipe and DIA-NN. The run finishes with DIA-NN output files however, I keep getting a skyline …
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Hey, I am running some Astral DIA data on FragPipe, and am running into an unclear error in DIA-NN. The workflow is using a spectral library generated from this same set. Please advise.
Thanks,
Ch…
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Hello,
I want to extract the 1/k0 values for my precursors from my DIA-PASEF run. In the DIA-NN output there are two ion mobility entries: IM and iIM that are slightly different. What is the exact …
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I am currently attempting to modify the deepnovo-dia model, which takes a "profile" as part of its input. This "profile" represents intensity values over the retention time range and is formatted as p…
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Hello, I encountered an issue as described in the title.
Building Spectral Library using DIA-NN v1.9.1
I created a spectral library using DIA-NN 1.9.1 with the following parameters. The output f…
Mnago updated
3 months ago
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I am searching timsTOF HT DIA data using DIA-NN. It would be helpful to have Precursor.Mz values column (also delta ppm values) in DIA-NN report file. Currently I am using Fragpipe to get mz values.
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