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### Please link to the GitHub Discussion for this proposed analysis.
https://github.com/AlexsLemonade/OpenScPCA-analysis/discussions/722
### Describe the goals of this analysis module.
To use CellT…
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Is it possible to perform differential expression analysis for each patient and to get the output logFC for each patient
Thanks.
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Dear Ruth,
I'm very interested in your package, but please consider I'm pretty new to the topic.
We were conceptually thinking about some utilizations...
I understand that the registration of t…
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Hello,
Does libra have the same capability as Seurat to only test genes that are detected in a minimum fraction of min.pct cells in either of the two populations when performing differential expres…
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**User story**
User wants to perform computation on (a subset of) the data that is used for visualization in Vitessce. For example, to perform a differential expression test between two groups of c…
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The total counts of single cells differ significantly, which affects the downstream differential expression analysis. So I was thinking to normalize the data before differential expression analysis. S…
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### Analysis Environment
- [x] Installation of `scverse` tools
- [ ] #19
### Analysis Steps
- **Preprocessing**
- [ ] #9
- [ ] #14
- [x] #4
- **Cell typing**
- [ ] #16
- [ ] #3
…
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What is the derivative of `x` with respect to `2x`? 1/2 is a great answer. An error is good too. 0 is wrong.
```julia
julia> @variables x;
help?> Symbolics.derivative
derivative(O, v; simpli…
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From the docstring,
```julia
help?> Differential
search: Differential
struct Differential using Symbolics
julia> @variables x y;
julia> D = Differential(x)
(D'~x)
```
B…
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Hi,
I have Stereo-seq data for six samples paired with adjacent HE staining images. The distance between the HE images and the spatial transcriptome data is ~10 um. Are the any techniques that can …