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For the sake of using the proportions generated by ABIS in cell type aware differential expression (TOAST package), I was recommended to merge similar cell types into 5-8 types only.
1. Is there a…
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I was testing out the latest `rc` release to do `dmr multi` without specifying `--regions` and still got the error:
```
error: the following required arguments were not provided: …
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@ppavlidis @santina
Here is our [progress report](https://github.com/STAT540-UBC/team_Methylhomies/blob/master/progress_report.md). Our final commit is b4a363b. Any related files in GitHub are link…
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Hi,
In your paper you have mentioned that "dmrseq is generally applicable to WGBS data". My impression is that methods that work for WGBS also work for RRBS data. Have you tried dmrseq for RRBS data?…
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I have been looking into using the RNA-seq data but have some questions on the gene annotations for the V2-RNA-seq data that I get from running your GDC-prepare-function.
How do the 21022 genes tha…
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# 时间表
# 演讲者
![people](https://user-images.githubuserconten…
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### What is the title of the roadmap you are submitting?
Roadmap to Bioinformatics
### Roadmap Link
# Bioinformatics Roadmap
**0. Why Bioinformatics?**
- **What is Bioinformatics?** Bioinfo…
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@rawnakhoque I asked the PDF in our lab and he showed me that everything has been done in bash. Follow the installation and basic configuration step by step [here](http://homer.ucsd.edu/homer/introduc…
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Hi,
I am trying to compare m6A methylation between WT vs KO samples. They are direct RNA sequencing samples.
My collaborator used "sup" model in running MinKNOW, and sent me the POD5 files. I…
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Hello dear MASH team, thank you for developing this pipeline!
I am trying to apply MASH on Bhat and Shat extracted from differential methylation analysis (MACAU). The matrices are 8 x 236000 featur…