stephenslab mashr issues

stephenslab / mashr

An R package for multivariate adaptive shrinkage.

https://stephenslab.github.io/mashr

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issues

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citation for EM approach to estimate V

#135 stephens999 opened 1 week ago
1
Condition wise posterior

#134 pcarbo closed 1 week ago
0
Division by zero in mash_set_data with df matrix after applying p2z

#133 dorolin opened 1 week ago
0
better documentation for missing data and EE and EZ model

#132 stephens999 opened 2 weeks ago
2
Is it valid to test whether two posterior means are different with t-test?

#131 MaximalLife opened 1 month ago
3
need better documentation for computing posterior for linear combinations of effects

#130 stephens999 opened 1 month ago
4
Application of mashr to smaller number of tests

#129 vinettey opened 2 months ago
1
Sampling and inspecting posterior

#128 BaptisteSadoughi closed 2 months ago
4
eqtl analysis problem - decrease running time and memory burden - running mashr by chromosome

#127 jke20 opened 3 months ago
6
application to very sparse conditions, need to intersect?

#126 BradleyH017 opened 3 months ago
7
Error in extreme_deconvolution_rcpp when using the strong tests to set up data-driven covariances.

#125 Gongmian784 opened 3 months ago
3
Evaluation of false positives

#124 AlexSimis closed 4 months ago
2
Issue with the selection of random subsample

#123 AlexSimis closed 5 months ago
5
Peforming mash with eQTL results from different variants & gene sets across conditions

#122 kimbioinfo opened 6 months ago
1
eQTL analysis problem

#121 yrjia1015 closed 9 months ago
3
Flashier updates

#120 willwerscheid closed 1 year ago
1
allow numeric prior

#119 ajaynadig closed 1 year ago
3
Potential issue of computing posterior summaries for a single test

#118 ez-xyz opened 1 year ago
4
MatrixEQTLSumStats.Portable.Z.rds?

#117 carmenmacr11 opened 1 year ago
3
Question about the methodology for selecting strong datasets

#116 harrsha4 opened 1 year ago
1
Issue in cov_flash() function

#115 fmorgante opened 1 year ago
5
new mashr cov_flash() use flashier package

#114 arkyl opened 1 year ago
7
Document allowing missing data in mash_set_data

#113 pcarbo opened 1 year ago
0
mashr for multiple gwas

#112 arkyl opened 1 year ago
5
mashr with flashier

#111 pcarbo closed 1 year ago
2
warning: solve(): system is singular (rcond: 1.34847e-17); attempting approx solution

#110 GabrielHoffman closed 2 years ago
4
can mashr be used in interaction terms

#109 arkyl opened 2 years ago
2
Error when df is a matrix

#108 jmp448 closed 2 years ago
1
fix mash_set_data for multiple df values

#107 jmp448 closed 2 years ago
0
Adding Nullbiased Weight to mash

#106 eweine closed 2 years ago
1
added nullweight parameter into mash function

#105 eweine closed 2 years ago
7
How to use mashr to estimate the change in some quantity measured in multiple conditions compared with different conditions

#104 WangRong423 opened 2 years ago
0
Covariates used for condition-by-condition analyses

#103 ghost opened 2 years ago
1
multiple cohorts from the same tissue

#102 arkyl opened 3 years ago
5
The new function mash_estimate_corr_em does not work on mashr 0.2.50

#101 hh622 closed 3 years ago
5
Multiple related phentypes & QTL summary stats

#100 anamariaUIC opened 3 years ago
3
mash_set_data docs

#99 stephens999 opened 3 years ago
0
update docs for estimate_null_correlation

#98 stephens999 opened 3 years ago
0
Document mash return value

#97 pcarbo opened 3 years ago
0
Bayes Factor calculation at the unit level

#96 pekjoonwu opened 3 years ago
3
speed up sampling from the posterior

#95 jakejh closed 3 years ago
9
segfault when cov_ed log file cannot be created or written to

#94 pcarbo opened 3 years ago
2
maybe we should not output lfdr?

#93 stephens999 closed 3 years ago
4
Local false sign rate of 0?

#92 ghost closed 3 years ago
2
Inflated false positives caused by using rank 1 prior covariance matrix

#91 DongyueXie opened 3 years ago
5
mash with multi-level conditions

#90 ghost opened 3 years ago
5
Running mash on non centered z-scores

#89 william-denault closed 3 years ago
4
Add cov_flash()

#88 gaow closed 3 years ago
0
mash() takes weeks to compute posterior matrices

#87 resztak closed 3 years ago
18
Pairwise sharing - why does effect only have to be significant in one condition?

#86 arider2 opened 4 years ago
3