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stephenslab
/
mashr
An R package for multivariate adaptive shrinkage.
https://stephenslab.github.io/mashr
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Sampling and inspecting posterior
#128
BaptisteSadoughi
opened
1 week ago
2
eqtl analysis problem - decrease running time and memory burden - running mashr by chromosome
#127
jke20
opened
2 weeks ago
3
application to very sparse conditions, need to intersect?
#126
BradleyH017
opened
3 weeks ago
7
Error in extreme_deconvolution_rcpp when using the strong tests to set up data-driven covariances.
#125
Gongmian784
opened
3 weeks ago
3
Evaluation of false positives
#124
AlexSimis
closed
1 month ago
2
Issue with the selection of random subsample
#123
AlexSimis
closed
2 months ago
5
Peforming mash with eQTL results from different variants & gene sets across conditions
#122
kimbioinfo
opened
3 months ago
1
eQTL analysis problem
#121
yrjia1015
closed
6 months ago
3
Flashier updates
#120
willwerscheid
closed
1 year ago
1
allow numeric prior
#119
ajaynadig
closed
1 year ago
3
Potential issue of computing posterior summaries for a single test
#118
ez-xyz
opened
1 year ago
4
MatrixEQTLSumStats.Portable.Z.rds?
#117
carmenmacr11
opened
1 year ago
3
Question about the methodology for selecting strong datasets
#116
harrsha4
opened
1 year ago
1
Issue in cov_flash() function
#115
fmorgante
opened
1 year ago
5
new mashr cov_flash() use flashier package
#114
arkyl
opened
1 year ago
7
Document allowing missing data in mash_set_data
#113
pcarbo
opened
1 year ago
0
mashr for multiple gwas
#112
arkyl
opened
1 year ago
5
mashr with flashier
#111
pcarbo
closed
1 year ago
2
warning: solve(): system is singular (rcond: 1.34847e-17); attempting approx solution
#110
GabrielHoffman
closed
1 year ago
4
can mashr be used in interaction terms
#109
arkyl
opened
1 year ago
2
Error when df is a matrix
#108
jmp448
closed
2 years ago
1
fix mash_set_data for multiple df values
#107
jmp448
closed
2 years ago
0
Adding Nullbiased Weight to mash
#106
eweine
closed
2 years ago
1
added nullweight parameter into mash function
#105
eweine
closed
2 years ago
7
How to use mashr to estimate the change in some quantity measured in multiple conditions compared with different conditions
#104
WangRong423
opened
2 years ago
0
Covariates used for condition-by-condition analyses
#103
ghost
opened
2 years ago
1
multiple cohorts from the same tissue
#102
arkyl
opened
2 years ago
5
The new function mash_estimate_corr_em does not work on mashr 0.2.50
#101
hh622
closed
2 years ago
5
Multiple related phentypes & QTL summary stats
#100
anamariaUIC
opened
3 years ago
3
mash_set_data docs
#99
stephens999
opened
3 years ago
0
update docs for estimate_null_correlation
#98
stephens999
opened
3 years ago
0
Document mash return value
#97
pcarbo
opened
3 years ago
0
Bayes Factor calculation at the unit level
#96
pekjoonwu
opened
3 years ago
3
speed up sampling from the posterior
#95
jakejh
closed
3 years ago
9
segfault when cov_ed log file cannot be created or written to
#94
pcarbo
opened
3 years ago
2
maybe we should not output lfdr?
#93
stephens999
closed
3 years ago
4
Local false sign rate of 0?
#92
ghost
closed
3 years ago
2
Inflated false positives caused by using rank 1 prior covariance matrix
#91
DongyueXie
opened
3 years ago
5
mash with multi-level conditions
#90
ghost
closed
3 years ago
2
Running mash on non centered z-scores
#89
william-denault
closed
3 years ago
4
Add cov_flash()
#88
gaow
closed
3 years ago
0
mash() takes weeks to compute posterior matrices
#87
resztak
closed
3 years ago
18
Pairwise sharing - why does effect only have to be significant in one condition?
#86
arider2
opened
3 years ago
3
mashr posterior mean and SD all equal to 0 on sc eQTL results
#85
resztak
closed
3 years ago
6
What does a negative local false sign rate mean?
#84
arider2
closed
4 years ago
3
CRAN release
#83
gaow
closed
4 years ago
0
A test failed on cran comparing R and C++ result
#82
gaow
closed
3 years ago
1
warning message in cov_ed
#81
Young-Sook
closed
4 years ago
4
adding extra confounders?
#80
Neleor
opened
4 years ago
4
error: inv_sympd(): matrix is singular or not positive definite
#79
Young-Sook
closed
4 years ago
12
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