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Hello, I am new to Seurat. I am trying to split a class 4 seurat object created from a publicly available 10X cellranger 2 processed dataset that was downloaded from the broad single cell portal:
h…
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Dear Single Cell Portal Team,
I am working on a meta analysis where I compare different single cell RNAseq data sets. As part of the manuscript I would like a browser based way for readers to explo…
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Plan:
1. add all remaining nifstd classes from nifga lacking equivalence axioms
2. add logical defs for regional parts (trivial)
3. gradually replace all uses of regional part with unfolded expression…
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Hi,
I am trying to estimate reference expression signatures from this very large dataset from the Linnarson lab:
http://mousebrain.org/downloads.html
I am loading there l5_all.loom file as an…
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### Context
This is a second hand report from a user friend and I wasn't able to replicate it because of #2576 , but apparently `https://www.refine.bio/dataset/b37a9aa9-ef34-4ab8-998c-def1957b1da9`…
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Please enter your suggested changes or comments here. If your comment relates to a specific term, please provide the PathGO id or rdfs:label of the term in addition to your comment.
For new term r…
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The following are some of the clusters that I thought might be interesting/useful (mined from the ~400 CDRs), and I'm trying to see whether folks are interested in adding some of them as new nodes. Th…
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Here is a list of obsoletion candidates. I used the following heuristic to guestimate which are "pseudo-generalizations" - i.e. terms cloned from ZFA into TAO and then lifted into phenoscape-ext.
Fir…
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Aim: improve the maintainability of the project catalogue, allowing it to grow without causing an increasing amount of development overhead. Currently, it is populated via a manually run script that c…
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I'm trying to fit a deterministic pomp model to a cohort study data, where individuals were kept track of on a monthly scale.
Plot below shows the number of individuals tested on a monthly scale a…