broadinstitute single_cell_portal issues

broadinstitute / single_cell_portal

Tutorials, workflows, and convenience scripts for Single Cell Portal

https://singlecell.broadinstitute.org/single_cell

BSD 3-Clause "New" or "Revised" License

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issues

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Create README.md

#129 jlchang opened 8 months ago
1
Bump numpy from 1.19.2 to 1.22.0

#128 dependabot[bot] opened 2 years ago
0
R Markdown notebook to guide usage of seurat_scp_convenience.R (SCP-3784)

#127 jlchang closed 3 years ago
0
(SCP-3710) adding spatial example file

#126 devonbush closed 3 years ago
0
SCP files -> Seurat object example code (SCP-3631)

#125 jlchang closed 3 years ago
1
download individual files using command line

#124 hurleyLi closed 3 years ago
7
Updating to scp-ingest-pipeline 1.11.0 (SCP-3414)

#123 bistline closed 3 years ago
1
Update metadata labels per EFO changes for 10x protocols (SCP-3371)

#122 eweitz closed 3 years ago
0
Update "10X" to "10x" per EFO change (SCP-3290)

#121 eweitz closed 3 years ago
0
Remove files

#120 knapii-developments closed 3 years ago
0
Update images

#119 knapii-developments closed 3 years ago
1
Uploading wiki pictures

#118 knapii-developments closed 3 years ago
1
Entry with several datasets

#117 Sara-Jager closed 3 years ago
3
added fade to image RHS

#116 jlchang closed 3 years ago
0
adding cropped image

#115 jlchang closed 3 years ago
0
add annotated image of mc_example for review

#114 jlchang closed 3 years ago
3
update metadata convention compliant metadata example

#113 jlchang closed 3 years ago
0
increment for PyPI release (SCP-2840)

#112 jlchang closed 3 years ago
0
Add metadata-convention-compliant metadata file (SCP-2832)

#111 jlchang closed 4 years ago
2
* SCP-2826 Remove sort script

#110 knapii-developments closed 4 years ago
1
Prevent file overwrite by manage-study (SCP-2698)

#109 jlchang closed 4 years ago
1
Supply user-agent string with manage-study API requests (SCP-2415)

#108 jlchang closed 4 years ago
1
increment requirements.txt in parallel with PyPI release (SCP-2661)

#107 jlchang closed 4 years ago
0
update manage-study to handle full_description (SCP-2661)

#106 jlchang closed 4 years ago
1
update README to contact SCP support via Zendesk (SCP-2643)

#105 jlchang closed 4 years ago
0
Increment PyPI package version (SCP-2598)

#104 jlchang closed 4 years ago
0
Waiting for remote file status forever

#103 kvshams closed 4 years ago
2
Publish single_cell_portal to PyPI (SCP-2414)

#102 jlchang closed 4 years ago
1
Remove /scripts/genomes and make_toy_data.py

#101 eweitz closed 4 years ago
0
Add convenience scripts for writing SCP files from analysis objects (SCP-3784)

#100 vkozareva closed 3 years ago
0
Enable bigger, more realistic toy matrices (SCP-2464)

#99 eweitz closed 4 years ago
1
Data submission problem

#98 yulongliu68 closed 4 years ago
2
Local metadata validation CLI

#97 knapii-developments closed 4 years ago
1
Missing studies

#96 liu-xingliang closed 4 years ago
2
Support functionality related to editing studies through Python CLI

#95 vkozareva closed 4 years ago
2
Read Count Data

#94 vschulz closed 3 years ago
3
More Intuitive Filters on Home Page

#93 DarioS closed 1 year ago
4
[General Feedback] Google authentication timing

#92 mshadbolt closed 4 years ago
1
can't access the dataset

#91 JianGuoZhou3 closed 4 years ago
1
Gene name association error when with the same spelling but different case

#90 yulongliu68 closed 4 years ago
5
Reference for scRNA-Seq data on Single Cell Portal

#89 mmadeira97 closed 4 years ago
1
Analysed expression data spreadsheet

#88 Diana-star-code closed 4 years ago
5
Single-cell RNA-seq reveals new types of human blood dendritic cells, monocytes, and progenitors

#87 Diana-star-code closed 4 years ago
6
Enable "staging" environment for public CLI (SCP-2025)

#86 eweitz closed 4 years ago
0
Please consider compressing text files

#85 slowkow closed 4 years ago
3
Add metadata convention flag to public CLI [SCP-1913]

#84 eweitz closed 4 years ago
0
use validation wrapper function in manage_study.py

#83 jlchang closed 4 years ago
1
T Helper Cell Cytokines Modulate Intestinal Stem Cell Renewal and Differentiation resource not available

#82 TomasBrabec closed 4 years ago
2
Report code coverage metrics (SCP-1809)

#81 eweitz closed 5 years ago
1
Test CLI upload and parse of cluster file

#80 eweitz closed 5 years ago
0