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broadinstitute
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single_cell_portal
Tutorials, workflows, and convenience scripts for Single Cell Portal
https://singlecell.broadinstitute.org/single_cell
BSD 3-Clause "New" or "Revised" License
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Validate metadata using convention
#79
eweitz
closed
5 years ago
0
CLI `verbose` option, refined messaging
#78
eweitz
closed
5 years ago
2
Implement file parsing via public CLI
#77
eweitz
closed
5 years ago
0
Fix nondeterministic test
#76
eweitz
closed
5 years ago
0
Continuous integration
#75
eweitz
closed
5 years ago
1
Login
#74
sjwalker223
closed
5 years ago
7
No gene gene expression in the tSNE
#73
kvshams
closed
5 years ago
3
How to handle mtx files in R
#72
kvittingseerup
closed
5 years ago
5
Information shared when login in with google
#71
kvittingseerup
closed
5 years ago
1
Change user-facing reference from "coordinate" file to "cluster" file
#70
jlchang
closed
5 years ago
1
Refactor script to make toy data
#69
eweitz
closed
5 years ago
0
dockerfile and WDL updates for inferCNV 0.99.7 in SCP
#68
jlchang
closed
5 years ago
0
POC: Ingest loom into firestore and structure zarr into acceptable data format
#67
knapii-developments
closed
5 years ago
0
Refine inferCNV workflow: HMM, threads, R 3.6, test data
#66
eweitz
closed
5 years ago
1
Difficulty in downloading data
#65
Jaremedwards
closed
5 years ago
7
Support study file upload via CLI and Python library
#64
eweitz
closed
5 years ago
1
What is daily quota?
#63
zhanxw
closed
5 years ago
6
Email sent to everyone when sharing a project
#62
gaelcge
closed
5 years ago
1
inferCNV beta
#61
eweitz
closed
5 years ago
0
Add BSD3 license
#60
eweitz
closed
5 years ago
0
studies missing from previous portal
#59
sandrine-muller-research
closed
5 years ago
2
Turn off todo args
#58
TimothyTickle
closed
5 years ago
0
Upstream adapter script for inferCNV reference analysis
#57
eweitz
closed
5 years ago
0
Human cell atlas data portal?
#56
Bohdan-Khomtchouk
closed
5 years ago
4
Support reference cell groups in matrix_to_ideogram_annots.py
#55
eweitz
closed
5 years ago
0
Note needed Google Cloud SDK set-up
#54
eweitz
closed
5 years ago
0
Remove shell prompts from commands
#53
alanocallaghan
closed
5 years ago
1
Extracting study metadata
#52
alanocallaghan
closed
4 years ago
11
Hyperlink DOI to preferred resolver
#51
katrinleinweber
closed
5 years ago
1
Python library and basic CLI for SCP REST API
#50
eweitz
closed
5 years ago
0
Update inferCNV to v0.8.2
#49
eweitz
closed
5 years ago
2
Studies loading very slowly
#48
gurmank
closed
5 years ago
8
Cleaning up inferCNV dependencies
#47
bistline
closed
5 years ago
0
Citation information
#46
Bohdan-Khomtchouk
closed
5 years ago
3
Adding infercnv-alpha dockerfile
#45
bistline
closed
5 years ago
0
Pipeline for ideogram expression means
#44
eweitz
closed
5 years ago
0
Cross comparison
#43
gaelcge
closed
4 years ago
12
Cannot open any studies
#42
nkogan
closed
5 years ago
4
Can not modify the study data
#41
kvshams
closed
5 years ago
2
Explore Tab Contents Never Load
#40
DarioS
closed
5 years ago
13
Remove migrated code
#39
eweitz
closed
5 years ago
1
Scatter Plot
#38
DarioS
closed
4 years ago
5
Parse genome assemblies for SCP species integration
#37
eweitz
closed
6 years ago
2
Cannot add a study
#36
slowkow
closed
6 years ago
5
REST API?
#35
Bohdan-Khomtchouk
closed
5 years ago
3
Toy Data Generator Updates
#34
YanayRosen
closed
6 years ago
0
Uploaded Site Figures For Dot Plot
#33
YanayRosen
closed
6 years ago
0
adding requirements information for running python scripts
#32
bistline
closed
6 years ago
0
Fixed sorting headers and added directory support
#31
YanayRosen
closed
6 years ago
0
Sparse matrix sorting script
#30
YanayRosen
closed
6 years ago
0
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