broadinstitute single_cell_portal issues

broadinstitute / single_cell_portal

Tutorials, workflows, and convenience scripts for Single Cell Portal

https://singlecell.broadinstitute.org/single_cell

BSD 3-Clause "New" or "Revised" License

48 stars 25 forks source link

issues

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Test CLI upload and parse of cluster file

#80 eweitz closed 5 years ago
0
Validate metadata using convention

#79 eweitz closed 5 years ago
0
CLI `verbose` option, refined messaging

#78 eweitz closed 5 years ago
2
Implement file parsing via public CLI

#77 eweitz closed 5 years ago
0
Fix nondeterministic test

#76 eweitz closed 5 years ago
0
Continuous integration

#75 eweitz closed 5 years ago
1
Login

#74 sjwalker223 closed 5 years ago
7
No gene gene expression in the tSNE

#73 kvshams closed 5 years ago
3
How to handle mtx files in R

#72 kvittingseerup closed 5 years ago
5
Information shared when login in with google

#71 kvittingseerup closed 5 years ago
1
Change user-facing reference from "coordinate" file to "cluster" file

#70 jlchang closed 5 years ago
1
Refactor script to make toy data

#69 eweitz closed 5 years ago
0
dockerfile and WDL updates for inferCNV 0.99.7 in SCP

#68 jlchang closed 5 years ago
0
POC: Ingest loom into firestore and structure zarr into acceptable data format

#67 knapii-developments closed 5 years ago
0
Refine inferCNV workflow: HMM, threads, R 3.6, test data

#66 eweitz closed 5 years ago
1
Difficulty in downloading data

#65 Jaremedwards closed 5 years ago
7
Support study file upload via CLI and Python library

#64 eweitz closed 5 years ago
1
What is daily quota?

#63 zhanxw closed 5 years ago
6
Email sent to everyone when sharing a project

#62 gaelcge closed 5 years ago
1
inferCNV beta

#61 eweitz closed 5 years ago
0
Add BSD3 license

#60 eweitz closed 5 years ago
0
studies missing from previous portal

#59 sandrine-muller-research closed 5 years ago
2
Turn off todo args

#58 TimothyTickle closed 5 years ago
0
Upstream adapter script for inferCNV reference analysis

#57 eweitz closed 5 years ago
0
Human cell atlas data portal?

#56 Bohdan-Khomtchouk closed 5 years ago
4
Support reference cell groups in matrix_to_ideogram_annots.py

#55 eweitz closed 5 years ago
0
Note needed Google Cloud SDK set-up

#54 eweitz closed 5 years ago
0
Remove shell prompts from commands

#53 alanocallaghan closed 5 years ago
1
Extracting study metadata

#52 alanocallaghan closed 4 years ago
11
Hyperlink DOI to preferred resolver

#51 katrinleinweber closed 5 years ago
1
Python library and basic CLI for SCP REST API

#50 eweitz closed 5 years ago
0
Update inferCNV to v0.8.2

#49 eweitz closed 5 years ago
2
Studies loading very slowly

#48 gurmank closed 5 years ago
8
Cleaning up inferCNV dependencies

#47 bistline closed 5 years ago
0
Citation information

#46 Bohdan-Khomtchouk closed 5 years ago
3
Adding infercnv-alpha dockerfile

#45 bistline closed 5 years ago
0
Pipeline for ideogram expression means

#44 eweitz closed 6 years ago
0
Cross comparison

#43 gaelcge closed 4 years ago
12
Cannot open any studies

#42 nkogan closed 6 years ago
4
Can not modify the study data

#41 kvshams closed 6 years ago
2
Explore Tab Contents Never Load

#40 DarioS closed 5 years ago
13
Remove migrated code

#39 eweitz closed 6 years ago
1
Scatter Plot

#38 DarioS closed 4 years ago
5
Parse genome assemblies for SCP species integration

#37 eweitz closed 6 years ago
2
Cannot add a study

#36 slowkow closed 6 years ago
5
REST API?

#35 Bohdan-Khomtchouk closed 6 years ago
3
Toy Data Generator Updates

#34 YanayRosen closed 6 years ago
0
Uploaded Site Figures For Dot Plot

#33 YanayRosen closed 6 years ago
0
adding requirements information for running python scripts

#32 bistline closed 6 years ago
0
Fixed sorting headers and added directory support

#31 YanayRosen closed 6 years ago
0

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