-
Hi, I am comparing two vcf file, and get the following errors:
```
[W] overlapping records at 1:6799149 for sample 0
[W] Variants that overlap on the reference allele: 1346
[I] Total VCF records…
-
[//]: # (Please do not include your AWS account or credentials as part of the bug request.)
**Describe the Bug**
Trying to setup Amazon Genomics CLI for a genomics workflow
**Steps to Repro…
-
## Summary
Since we are using the WES (Workflow Execution Service) that follows the GA4GH WES 1.1.0 standard (https://ga4gh.github.io/workflow-execution-service-schemas/docs/), to execute Pipelines w…
-
In [`68f890d`](https://github.com/CERIT-SC/uptime/commit/68f890d333de8d4acf688bf70210581c5e68808d
), Workflow Execution Service K8s -- WES (https://wes-prod.cloud.e-infra.cz/ga4gh/wes/v1/ui/) was **do…
-
**Describe the bug**
While looking at `docker compose logs` I notice below error throughout.
```
prowes-rabbitmq-1 | 2024-01-10 11:09:53.312203+00:00 [error] Error on AMQP connection (172.1…
-
This was fixed here: https://github.com/grbot/ga4gh-starter-kit-wes/blob/main/src/main/java/org/ga4gh/starterkit/wes/utils/requesthandler/SubmitRunRequestHandler.java#L214
Can test on workflow here…
-
A transient IT failure wes experienced on `anvilprod`.
IT Job [17117](https://gitlab.prod.anvil.gi.ucsc.edu/ucsc/azul/-/jobs/17117):
```
2023-12-05 19:31:19,938 INFO MainThread test.integrat…
-
In [`8bf505d`](https://github.com/CERIT-SC/uptime/commit/8bf505d65cc3eb346929311d8f09ae14603723ce
), Workflow Execution Service K8s -- WES (https://wes-prod.cloud.e-infra.cz/ga4gh/wes/v1/ui/) was **do…
-
Hi
I have pulled your docker and I am certain bam files are in the path but gate can not locate them
```
(gatk) root@34684eaa046e:/gatk/data/Continuum/WES/vcf# java -d64 -XX:+UseSerialGC -Xmx3G…
-
In [`1ed49c2`](https://github.com/CERIT-SC/uptime/commit/1ed49c26e326efa5006a0d598ee4ee7a431c9995
), Workflow Execution Service K8s -- WES (https://wes-prod.cloud.e-infra.cz/ga4gh/wes/v1/ui/) was **do…