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Hello,
The vcf that is outputted by pandora gives variant positions with respect to each individual gene. Is it possible to map the position of variants with respect to the pangenome reference?
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Hello, thank you for this pipeline that seems very interesting !
I have 3 questions :
- About the input files, especially the "gc" and "mappability" bed files. It's the first package I find that…
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Hey hackseq 17 organisers, I think we may need a meeting to wrap up this year's hackseq. When can we meet? It'd be 6:30pm at the GSC again if that works.
Doodle: https://doodle.com/poll/hz6bg6ib8xv…
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Dear BAGA developers,
I would be happy to get support with the following problem concerning rearrangement analysis within the BAGA pipeline, installed on December 2nd from git clone http://github.…
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Hi Chris,
I am attempting to implement iRep for a single metagenomic reconstruction and a very large sam file (36 G). The default thread behaviour is listed a 6 threads, but top reveals I am only usi…
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Hi,
I am getting no results when i runHomer.
I add pmat to my snapATAC file in R.
the peak files (bed) added to the .snap file are in the format
chr1 102949 103224
I also tried with bed file…
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Hello, thanks for updates for your tool.
We're trying to update our docker containers with your tool but registered different results for `v1.2.0` and `v1.2.2`:
Run commands:
```
/soft/msisensor…
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Hi,
I was running CHROMEISTER on a plant genome against itself (~1 Gbp) where I expected to see some synteny between chromosomes, but did not see any. I then tested CHROMEISTER on a chloroplast ge…
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Hi,
the Debian packaged kraken has added a simple test suite that used to work with version 0.10.5 but stoped working since version 1.0. Some investigation has shown that the fasta examles (for inst…
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Hi,
Thank you very much for great tool!
I have encountered error when using DFAST for rRNA prediction - no rRNA genes in output.
DFAST was run in debug mode and this is my barrnap log output:…