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Calling doLouvainCluster yeilds the following error:
`doLouvainCluster(go)`
> Error in igraph::as_data_frame(x = igraph_object, what = "edges") :
> Not a graph object
This seems to be…
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Context:
Downloaded and installed giotto last week of May and attempted to work through https://rubd.github.io/Giotto_site/articles/mini_seqfish.html. Made it successfully (most of way), but ja…
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Hello Giotto team,
I really appreciate your team's huge contributions to the community by sharing and providing cutting edge spatial analysis platforms for recent years.
We have noticed discrepa…
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Hi,I am trying to run doHMRF in my windows system and an error happend: 'java.lang.ClassNotFoundException: GraphColoring'. I had installed python packages and R packages before in my r-minconda. I don…
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Hello,
First of all, thanks again for this great tool!
I noticed that after loading giotto objects using loadGiotto, the column feat_ID_unique of the spat vector is truncated to feat_ID_un. This…
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Hello,
I tried to run the function doScrubletDetect after creating my Giotto object but I am running into this error:
Error in as.vector(data) :
no method for coercing this S4 class to a ve…
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Hi Giotto-ers,
I am using GiottoSuite and trying to cluster and identify cell types.
Does someone know how to sort the expression level fur dimFeatPlot2D() when showing genes?
Thanks,
Shi…
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Hello,
I am trying to perform deconvolution on some spatial data. I have had success running `Giotto::runDWLSDeconv()` previosuly but now I am using a larger signature matrix and it appears that `q…
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### Describe the bug
Some Flash clones like Vectorian Giotto sometimes put DefineMorphShape tags before the referenced DefineShape tag. This causes no issues in the official Flash player but causes o…
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Continuing @Umaarasu [discussion thread](https://github.com/drieslab/Giotto/discussions/661) as it is more fitting for this to be placed here.