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Hi,
I'm working with a Pipeline using the Space Layout and Concept Networks. In contrast to previous executions with the same code a second legend "color 2" appears in both plots. This disrupts the l…
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Hi. I'm trying to run simplifyEnrichment with enriched pathways from clusterProfiler GSEA function, but it gives me an error message. Below is an example with a similar analysis and the same error. I …
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Hello,
I have been working on R generating my GSEA output by using the gseGO function from the clusterprofiler R package. However, I had a lot of issues trying to modify or set my data to be plotte…
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**Describe the bug**
Hi everyone,
I am currently running SCENIC+ on an HPC machine without internet access. I encountered an issue during GSEA calculations, which I believe could be resolved with a…
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Hi! First of all, Thanks for making such an amazing package!
Recently I'm working on a single-cell DE-to-Enrichment workflow of my self. And when it comes to the GSEA part, it comes with this probl…
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Vignettes building, using the following command fails:
```
devtools::install_github("protViz/fgcz.gsea.ora", build_opts = c("--no-resave-data", "--no-manual"), build_vignettes = TRUE, force = TRUE)
…
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add notebook to cytoscape workflow github
modify output files to be gsea or generic compliant
https://bioconductor.org/packages/release/bioc/html/fgsea.html
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> dreep.data
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Hello,
Thank you for developing this R package. But I have encountered an error when using your package.
> gseaNb(object = gsea, geneSetID = "Parkinson disease",subPlot = 1)
Error in if (abs(max.…