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Great collection. Two papers missed probably:
Joint Unsupervised Learning of Deep Representations and Image Clusters. CVPR 2016 (yes, I am one of the authors, :))
Unsupervised Deep Embedding for…
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I am using Seurat to do filter and normalization. Currently I am using default method “LogNormalize”, but my colleague suggested using “BISCUIT” or other methods, I don’t know if Seurat can run BI…
jial2 updated
6 years ago
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When I performed BISCUIT in the step as following, the code gave rise to an error "Error in as.vector(data) : no method for coercing this S4 class to a vector". Would you help me with this problem?
T…
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Error in socketSelect(socklist) : not a list of sockets???
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Hi,
When I run start_file.R on around 3000 cells, the above error reported. How could I continue? Thank you.
Best,
Elaine
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Two questions.
1.What should be the correct format of input file if "z_true_labels_avl" set be TRUE?
First 4 lines of your example file 'expression_mRNA_17-Aug-2014.txt' is the cell annotation, is…
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For ImageNet script. This will give misleading accuracy because the test data is not unseen.
xu-ji updated
6 years ago
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Hello,
I am attempting a run of the BISCUIT algorithm with a gene X cell matrix, obtained from Seurat, of dimensions ~40,000 X ~60,000. I am running this through the BISCUIT docker installation on…
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Currently Keras implements its own batchnorm system "manually", i.e. by creating update ops to maintain exponential averages of relevant statistics. However batchnorm ops are available natively in TF,…