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New layout algorithms (e.g., https://marketplace.gephi.org/plugin/force-atlas-3d/ ) produce 3D layouts with z-coordinates. Export these when saving JSON if present.
Does this need to be an option in…
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Hi.
Thank you so much for doing this amazing work. The links alone saved me a ton of time and i am sucker for layouts in all forms and shapes :-)
In my search for graph layout algorithms, I rece…
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The type loading involves non-trivial time-consuming algorithms such as field or vtable layout. We may be able to speed up the type loading by storing additional pre-computed information in the R2R im…
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Hi, this project looks amazing (I can't believe I only just found it)!
I'm just doing a quick evaluation before I replace Isotope and have a question. I can see that it's possible to provide your o…
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Coming out of #2403:
> For 2, the final HM will have the addition of both horizontal lines separating phases, and the ability to move loci up and down to be in the right phase if they are not put th…
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### Background
Pathway knowledge describing interactions between proteins and other biological molecules is essential for interpreting and integrating diverse genomics data, understanding disease mec…
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For some algorithms it makes no sense to have a whole block of data in registers at once. For others a local buffer is bad due to dynamic indexing. For these it would be great to have versions of `cub…
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## Description
Some way to control edge length and "springiness" would really help when there are a lot of nodes and edges to display.
Consider an airport connected to 250 other airports, the scr…
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The following d2 file, with 1000 random node/edge/node causes d2 to go into an apparent infinite loop, I stopped it after 4hrs of CPU time.
Command Line: "d2 out.d2"
Version: v0.1.6 and v0.2.2
…
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In the meeting on 2021-04-19 with @alexandrupaler we discussed how to obtain a result we probably want to avoid relying on complex routing algorithms (like the one currently in place based on i-graph/…