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Need some proper docs.
Core components
- [x] 1. a very small concise README and a link to the docs generated using https://github.com/HOT-Ecosystem/tccm/issues/8.
- [x] 2. Don't spend time writin…
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I just
- fetched the latest `cidgoh/DataHarmonizer`
- checked out the `linkml-datastructure` branch
- copied https://raw.githubusercontent.com/microbiomedata/sheets_and_friends/issue-92-pipe-sep/a…
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I.e. as an alternative to using annotations (dh_sect_ord, dh:section_name and dh:column_number)
- dh:section_name annotation on a column -> slot_group
- dh:column_number annotation on a column-> r…
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https://github.com/microbiomedata/DataHarmonizer/blob/9a6c01397efbf76e5ad5d9c925515ffa8ce781f4/Makefile
```makefile
target/data.tsv: target/soil_biosample_modular.yaml
poetry run linkml2dataharm…
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There is a `geo_loc_name` section in the CanCOGeN template. I assume somebody entered the content below mostly by hand?
I would be interested in a tool that could populate the following into the te…
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We have a few different projects with their own sheet2linkml python frameworks (ccdh, nmdc, ...). Other projects have expressed interest in modeling schemas as sheets.
Is a generic framework possib…
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Possibly by taking advantage of the new [linkml/linkml-model-template](https://github.com/linkml/linkml-model-template)
It shouldn't be necessary to manually copy ccdhmodel.py and ccdhmodel.yaml in…
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I have read https://github.com/cidgoh/DataHarmonizer/wiki/DataHarmonizer-Templates#export_-fields but still don't understand how to use it.
I know there the templates bundled with this repo have ex…
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On the w3c/json-ld-syntax w3c/json-ld-syntax#389 proposes advancing work on YAML-LD. I was not able to transfer the issue to this repository, but further discussion and votes in support of starting th…
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* imports:
* imports to obo format files will not work in OWL toolchains
* always use official OBO PURLs in imports. For example, you are using PATO, see products here: http://obofoundry.…