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ljwh2 updated
3 years ago
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The marker column should implement a correct numerical sort, rather than defaulting to lexicographic. Currently, a sample study such as https://my.locuszoom.org/gwas/892028/ shows the following order …
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5e-8 is used by:
- [ ] other-phenos-for-gene
- [ ] `/random`
- [ ] Manhattan plot (just the line/tooltip)
- use `window.model`
- [ ] LocusZoom plot (just the line)
1e-6 is used by:
- [x] …
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On the pheno page, add a button "compare to other phenotype". When clicked, show an autocomplete searchbox of phenotype names. When one is selected, show:
1. *[easy]* Both Manhattan plots, shorte…
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# Purpose
The LocusZoom documentation is incomplete, and manually maintained. This makes it difficult to keep up to date.
# Scope of work
## Changes to existing documentation
- [x] Copy existing…
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- [x] allow the user to set the build in `config.py`.
- For now, just set `build = '38'` in `config.py`, and leave it undocumented so we can change it.
- Later: I wish that build and fields …
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Hello, I am trying to make some LocusZoom plots, using user supplied LD data. The summary statistics data is in --metal format and the program seems to recognize the LD file as well. After a long de…
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When splitting a track, the plot must resize to fit all of the stacked annotations. When merging the track back together, the plot doesn't go back to a size that compactly fits the visible data.
Il…
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I am using the geneLZ datasource within a "standard_association" plot with the API url:
`https://portaldev.sph.umich.edu/api/v1/annotation/genes/
`
The gene panel is working in some instances and…
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Currently we can only support submissions that contain up to a few hundred studies.
- identify where the bottlenecks are in the whole process
- in the submission process there are synchronous proce…