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Hi,
I'm trying to apply the pipeline described here https://benjjneb.github.io/LRASManuscript/LRASms_Zymo.html using 1.31 version of dada2. But I'm not getting the same number of filtered reads. Al…
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**Priority**: Low
This dataset is assigned to me "In Progress". Dataset has not yet been submitted so, should remain "In Progress" but assigned to the submitting author (Atle Mysterud) so that it's…
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Hello!
We are using gappa with metabarcoding of marine organisms and many of them they do not have a liner relationship with depth/density/temperature/etc., but they peak however an intermediate va…
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'Omics terms can be difficult to learn. Having them described in a single page may help new comers to overcome this barrier quickly and transfer knowhow that may be a pain to transfer through more for…
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Hello!
I am currently working on a COI metabarcoding project of marine samples and using the Leray COI primer for my analyses. Therefore, many examples shown here and in the paper apply to my study…
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Hi,
I have managed to install the Anacapa container and run the 12S example successfully.
Now I wanted to to run my own data but I am not sure I find all the options that need to be customized.
…
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**Submitting author:** @CedricMidoux (Cédric Midoux)
**Repository:** https://forgemia.inra.fr/migale/easy16s
**Branch with paper.md** (empty if default branch):
**Version:** v24.03
**Editor:** @fboeh…
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Dear Dominik, I am not sure if this warrants an issue, but when running BOLDigger without specifying the batch size the submitted fasta doesn't run. Someone on twitter was having the same issue. In ca…
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For example,
Simply changing
**a**cerates viridiflora (raf.) eaton
https://api.gbif.org/v1/species/match?name=acerates%20viridiflora%20(raf.)%20eaton
to
**A**cerates viridiflora (raf.) eaton…
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Hello @zachary-foster
I attended your workshop at the Phytobiome Conference in Montpellier last December and I managed to realize several comparing heat trees (using a phyloseq object). Again, tha…