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As I mentioned, each student will have a "project" that results in a "product". Do you have any preference to what such project is involved with? What is one idea that comes to mind based on the readi…
sr320 updated
6 years ago
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What do you imagine are the first three steps in your class project? Feel free to ask clarifying question in class or using issues..
sr320 updated
6 years ago
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It is my understanding that the optional parameter k of edlib.align() avoid unnecessary calculation when comparing 2 very distant strings. I assume the function stops when the number of edits reach th…
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We should describe a standard metabarcoding pipeline for vsearch as a guide to users.
It could be based on Frédéric's metabarcoding pipeline for swarm:
https://github.com/frederic-mahe/swarm/wik…
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Minor issue. Using Swarm 2.1.12 [Feb 14 2017 19:19:01] with the following invocation
```
${SWARM} \
-d 1 -f -t ${THREADS} -z \
-i ${FINAL_FASTA/.fasta/_1f.struct} \
-s ${FINAL_FASTA…
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Hi,
thanks a lot for this software. The concept is very convincing to me.
I just like to ask, why the base quality score is not used during the clustering and de-replication process?
Is it not poss…