Martinsos edlib issues - Githubissues

Martinsos / edlib

Lightweight, super fast C/C++ (& Python) library for sequence alignment using edit (Levenshtein) distance.

http://martinsos.github.io/edlib

MIT License

515 stars 167 forks source link

issues

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Newest Most commented Recently updated Oldest Least commented Least recently updated

Cannot identify alignments with more than 0 mismatches.

#229 Anjan-Purkayastha closed 1 week ago
2
Inconsistency with API on empty strings

#228 nkkarpov opened 2 months ago
2
Refactor .github/workflows/ci.yaml so that I first collect all the wheels and sdist as artifacts and only then publish them

#227 Martinsos opened 2 months ago
0
Improve bindings/python project's setup and organization

#226 Martinsos opened 2 months ago
0
In Github Actions, get building of python wheels working on macos-14 (arm64)

#225 Martinsos opened 2 months ago
0
Migrate from AppVeyor to Github Actions

#224 Martinsos opened 2 months ago
0
Added python setup info + building wheels locally + GH Action.

#223 Martinsos closed 2 months ago
2
Ubuntu 22.04, Python 3.12 => longintrepr.h: No such file or directory

#222 nick-youngblut closed 2 months ago
1
Python 3.12 support

#221 iiSeymour closed 2 months ago
3
Documentation outdated (v1.1.2 vs v1.2.7)

#220 sodiumnitrate opened 1 year ago
0
Multiple locations but one CIGAR?

#219 baraaorabi opened 1 year ago
0
Perl Wrapper around Edlib

#218 chrisarg closed 2 months ago
1
Cannot install edlib for Python 3.11 on Windows

#217 sverzakov closed 2 months ago
2
How to report all possibale positions not only the best one ?

#216 cherryamme closed 1 week ago
3
only assign result once

#215 maxbachmann closed 1 year ago
1
Encode horizontal deltas using +1/-1 indicators for up to 20% speed gain

#214 RagnarGrootKoerkamp opened 1 year ago
3
Choosing longest or shortest alignment

#213 brendanf opened 1 year ago
1
Wheels for macos python 3.11

#212 hredestig closed 2 months ago
2
Add ruby package to README

#211 kojix2 closed 2 months ago
2
fix typo

#210 RagnarGrootKoerkamp closed 2 months ago
1
results different with usearch and vsearch global alignment

#209 jianshu93 opened 2 years ago
0
[Documentation] (1) mention ruby-bindings and (2) mention "why use edlib" in the main README

#208 rubyFeedback closed 2 months ago
1
Wheels for python 3.10

#207 jzazo closed 2 years ago
2
only assign result once

#206 maxbachmann closed 1 year ago
2
Possible to customize costs used for gap opening, gap extension, indel and substitutions?

#205 ayaanhossain closed 2 years ago
3
Missing table data in paper

#204 RagnarGrootKoerkamp opened 2 years ago
0
Cigar results interpretation

#203 luchaoqi opened 2 years ago
0
finding all alignments within the string

#202 mehdiborji opened 2 years ago
5
updated export symbol procedure

#201 tbrekalo closed 1 year ago
0
Mention Perl binding in Readme

#200 wollmers opened 2 years ago
2
README additions, R/Julia packages

#199 evanbiederstedt closed 2 years ago
2
Create MANIFEST.in

#198 raybellwaves closed 2 months ago
3
Issue193

#197 GDCCP opened 3 years ago
0
Issue84 3

#196 GDCCP opened 3 years ago
0
Issue84 2

#195 GDCCP opened 3 years ago
0
incrementally remove explicit calls to free memory

#194 GDCCP opened 3 years ago
0
memory leak identified in myersCalcEditDistanceSemiGlobal

#193 GDCCP opened 3 years ago
0
Issue84

#192 GDCCP closed 3 years ago
2
Error when query or target is the empty string and task='path'

#191 RubenBSB opened 3 years ago
0
anchored alignment

#190 gorliver closed 3 years ago
2
align two arrays of strings

#189 gorliver closed 3 years ago
7
Is there a suffix mode?

#188 chenzhiw closed 3 years ago
3
Add section for installation instructions

#187 remz1337 closed 3 years ago
5
Simple edit (Hamming) distance

#186 remz1337 closed 3 years ago
3
UnicodeEncodeError: 'ascii' codec can't encode character '\x88' in position 0: ordinal not in range(128) when edlib.align(src, tar, task="path")

#185 clearloveclearlove closed 3 years ago
1
UnicodeEncodeError in Python binding

#184 ProKil closed 3 years ago
4
Sequence match (result.alignment) flags does not match the description in edlib.h

#183 ramana-athreya closed 3 years ago
2
Mention in README that overlap is not supported (and can't be due to how edit distance works)

#182 Martinsos opened 3 years ago
0
Infix (HW) alignment mode does not produce different result than standard NW on long sequences

#181 rlorigro closed 3 years ago
6
Does it support to customize the penalty?

#180 yanlolo closed 3 years ago
1