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Martinsos
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edlib
Lightweight, super fast C/C++ (& Python) library for sequence alignment using edit (Levenshtein) distance.
http://martinsos.github.io/edlib
MIT License
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Ubuntu 22.04, Python 3.12 => longintrepr.h: No such file or directory
#222
nick-youngblut
opened
4 days ago
0
Python 3.12 support
#221
iiSeymour
opened
1 month ago
0
Documentation outdated (v1.1.2 vs v1.2.7)
#220
sodiumnitrate
opened
9 months ago
0
Multiple locations but one CIGAR?
#219
baraaorabi
opened
9 months ago
0
Perl Wrapper around Edlib
#218
chrisarg
opened
10 months ago
0
Cannot install edlib for Python 3.11 on Windows
#217
sverzakov
opened
10 months ago
1
How to report all possibale positions not only the best one ?
#216
cherryamme
opened
1 year ago
1
only assign result once
#215
maxbachmann
closed
1 year ago
1
Encode horizontal deltas using +1/-1 indicators for up to 20% speed gain
#214
RagnarGrootKoerkamp
opened
1 year ago
3
Choosing longest or shortest alignment
#213
brendanf
opened
1 year ago
1
Wheels for macos python 3.11
#212
hredestig
opened
1 year ago
1
Add ruby package to README
#211
kojix2
opened
1 year ago
0
fix typo
#210
RagnarGrootKoerkamp
opened
1 year ago
0
results different with usearch and vsearch global alignment
#209
jianshu93
opened
1 year ago
0
[Documentation] (1) mention ruby-bindings and (2) mention "why use edlib" in the main README
#208
rubyFeedback
opened
1 year ago
1
Wheels for python 3.10
#207
jzazo
closed
1 year ago
2
only assign result once
#206
maxbachmann
closed
1 year ago
2
Possible to customize costs used for gap opening, gap extension, indel and substitutions?
#205
ayaanhossain
closed
1 year ago
3
Missing table data in paper
#204
RagnarGrootKoerkamp
opened
2 years ago
0
Cigar results interpretation
#203
luchaoqi
opened
2 years ago
0
finding all alignments within the string
#202
mehdiborji
opened
2 years ago
5
updated export symbol procedure
#201
tbrekalo
closed
11 months ago
0
Mention Perl binding in Readme
#200
wollmers
opened
2 years ago
2
README additions, R/Julia packages
#199
evanbiederstedt
closed
2 years ago
2
Create MANIFEST.in
#198
raybellwaves
opened
2 years ago
0
Issue193
#197
GDCCP
opened
2 years ago
0
Issue84 3
#196
GDCCP
opened
2 years ago
0
Issue84 2
#195
GDCCP
opened
2 years ago
0
incrementally remove explicit calls to free memory
#194
GDCCP
opened
2 years ago
0
memory leak identified in myersCalcEditDistanceSemiGlobal
#193
GDCCP
opened
2 years ago
0
Issue84
#192
GDCCP
closed
2 years ago
2
Error when query or target is the empty string and task='path'
#191
RubenBSB
opened
2 years ago
0
anchored alignment
#190
gorliver
closed
2 years ago
2
align two arrays of strings
#189
gorliver
closed
2 years ago
7
Is there a suffix mode?
#188
chenzhiw
closed
2 years ago
3
Add section for installation instructions
#187
remz1337
closed
2 years ago
5
Simple edit (Hamming) distance
#186
remz1337
closed
2 years ago
3
UnicodeEncodeError: 'ascii' codec can't encode character '\x88' in position 0: ordinal not in range(128) when edlib.align(src, tar, task="path")
#185
clearloveclearlove
closed
2 years ago
1
UnicodeEncodeError in Python binding
#184
ProKil
closed
2 years ago
4
Sequence match (result.alignment) flags does not match the description in edlib.h
#183
ramana-athreya
closed
3 years ago
2
Mention in README that overlap is not supported (and can't be due to how edit distance works)
#182
Martinsos
opened
3 years ago
0
Infix (HW) alignment mode does not produce different result than standard NW on long sequences
#181
rlorigro
closed
3 years ago
6
Does it support to customize the penalty?
#180
yanlolo
closed
3 years ago
1
meson: error: unrecognized arguments: -v
#179
grenaud
closed
3 years ago
2
Binary wheels for Windows
#178
ofek
opened
3 years ago
1
What do SHW and HW stand for?
#177
hgibling
closed
3 years ago
3
MacOS jobs on Travis are failing with "An error occurred while generating the build script."
#176
Martinsos
closed
3 years ago
1
Added missing 'os' in .travis.yml.
#175
Martinsos
closed
3 years ago
0
Migrate Edlib from travis .org to travis .com
#174
Martinsos
closed
3 years ago
1
Push python wheels
#173
cjw85
closed
3 years ago
9
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