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Allegedly GI identifiers are going away in June and switching to "accessioned" gb identifiers: https://www.ncbi.nlm.nih.gov/Sitemap/sequenceIDs.html
So ncbi_fetch should require gb's
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Following Dimitri's talk in the Webinar and an upload of an article this morning including a DNA accession number https://www.gbif.org/species/157062880
![image](https://user-images.githubuserconte…
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Hello everyone,
I'm a student of Manu's and I'm writing some documentation for pydna. I'm now writing documentation for the gibson assembly page, and I had been recommended to ask for some useful e…
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Hello K2SOHIGH,
I truly love your software, it's an amazing piece of tech.
Yet when I have installed it through conda, I had 2 bugs. When I compare the codes between the one on github and the one…
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**Describe the solution you'd like**
It's possible to link large resources that are in NCBI to ourside pages via a feature called ["LinkOut"](https://www.ncbi.nlm.nih.gov/projects/linkout/)
In par…
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We should allow sequences to be specified with external references (e.g., to NCBI, Addgene, or iGEM) that retrieve not SBOL but FASTA or GenBank, which will then be converted to SBOL.
This should b…
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We've encountered issues with the reporting of ORF1ab mutations falling in the ORF1b region where the -1 frameshift is not taken into account by SnpEff.
Nextclade uses a different GFF than viralre…
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We get many requests for converting into other formats and other validations. This isn't hard to do off-line, but would be good to do on-demand for a single annotation or on export. The only proble…
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I was looking for a fast way of processing large amounts of genbank entries, and found your library. It definitely offers an improvement over `biopython`, but I'm wondering why did you not include GBP…
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Author Name: **Chris Fields** (@cjfields)
Original Redmine Issue: 3414, https://redmine.open-bio.org/issues/3414
Original Date: 2013-02-19
Original Assignee: Bioperl Guts
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Not sure if this i…