-
https://mp.weixin.qq.com/s/OzE6J9DxebsWcmiuvq8fBQ
ixxmu updated
2 years ago
-
https://mp.weixin.qq.com/s/3oJll69icjMRumczUYlJLA
ixxmu updated
2 years ago
-
Your Wildtype and Frameshift plug-ins are very useful. Have you considered also making a plug-in for mutations on splice site regions?
Thanks
-
MOAlmanac is a cancer variant knowledgebase from BROAD/Dana-Farber with 820 assertions.
The API documentation is here: https://app.swaggerhub.com/apis-docs/vanallenlab/almanac-browser/0.2#/
Con…
-
Hello,
I am using docker to run antigen.garnish and I think everything worked as intended so far.
However, when I run
```R
# predict neoantigens
result % garnish_affinity(.)
```
I get the fol…
-
Hello,
i am running the pvacseq command with the `-p` option. The phased vcf file I created according to [this](https://pvactools.readthedocs.io/en/latest/pvacseq/input_file_prep/proximal_vcf.html). …
-
I am trying to apply fastq files of RNA-seq (paired-end) to NeoFuse to identify neoantigens.
My fastq files may contain low quality bases and adapter sequences. Should I prepare fastq files that excl…
-
I've been running tests of the latest version on R 4.1.0 using the inbuilt examples.
library(magrittr)
library(data.table)
library(antigen.garnish)
# load an example VCF
dir %
file…
-
thnanks a lot for the kind help
latest docker pvacseq
**Describe the bug**
I ran pvacseq, but it does not throw any error , but the pocess in ps aux become Z
**To Reproduce**
docker run -…
-
Hello, I was wondering if there was an argument option to output the wildtype epitope that the mutant epitope arose from? I can't back calculate the wild type epitope even though there is an output fi…