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Unfortunately, the sample extraction is not linked to the file search which results in unexpected behaviour, e.g.:
* You have matchExactSampleNames=true
* But you will get several bam files matching…
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I've tried with the following command for variant calling through gatk. But it didn't create any out file.
> **./gatk VariantFiltration -R /home/Documents/Tools_NGS/VariantCall/genome_assembly.fa …
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What data formats/options do DaSH attendees see sending as 'raw reads' to NMDP? FASTA? FASTQ? Done as an HML message payload or external link? If URI, where will the data live? For how long?
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Hi,
I am trying to find SNPs from WGS contigs dowloaded from NCBI by using snippy available at Galaxy server (https://usegalaxy.org/). However, an error is presented: "Fatal error: Exit code 2 ()"
…
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Should we add HiSAT and TopHat2 as well? Star?
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Hi All
Orange is a great package,the GUI is great, the functionality is great and has been a fantastic resource to help some of our students overcome their fear to Machine Learning and computer/data s…
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--Hi,
how to set Vardict to detect variants with VAF ~ 1%, which parameters can increase sensitivity ?
than you --
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Hello! THANK for this perfect software!
I am facing a strange problem that genomescope may identified the heterozygous peak as an error.
I am working on a Poaceae species, which was consider as …
wu116 updated
12 hours ago
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## **Describe the bug**
I've been looking at how the pipeline runs, and I noticed something strange. I'm doing something pretty simple, just running chip-seq analysis of existing data on a new refere…
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This issue is to explore the overview of Bioinformatics