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See https://github.com/ome/ome_zarr_test_suite/pull/11
Currently `ome-zarr-py` doesn't validate data, e.g. checking that essential metadata is present or that data is expected dimensions.
Maybe …
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Hiya, would this project be interested in https://crates.io/crates/openslide-rs support being added, probably as an optional feature?
I suggest optional as the underlying https://openslide.org/ is …
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I understand that the name OME-NGFF was a great choice for rallying the community around a new standardized, chunked, cloud-native image format. However, it is quite unspecific and will not age well. …
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I'm starting a new overview issue for the discussions around storing history/status of what workflows were run on a given dataset. We had prior discussions on this topic in https://github.com/fractal-…
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ATM I believe we are just testing if we can open them and two custom checks (not an empty group and not too deep of hierarchy). [Initial validate support, with --strict option](https://github.com/om…
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An attendee at TiM2023 (Dr. Sarah Schweighofer) had issues when both when importing her OBF file into OMERO as well as when converting it to OME-TIFF with NGFF-Converter. The same behavior is seen in …
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This ticket is to track the hackathon effort to make the multiview-reconstruction fusion zarr output ome (0.4) compatible.
- [ ] Add a simple ome-ngff .zattrs "top-level" metadata file.
- [ ] Pret…
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is it presence of `.omero` key within `.zattrs`?
and then taking the schema of that version
```shell
❯ jq '.omero.version' .zattrs
"0.4"
```
correct?
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Several of the IDR studies are now also available on S3 see https://idr.github.io/ome-ngff-samples/. Note that some from the BioImageArchive are also available at https://uk1s3.embassy.ebi.ac.uk/bia-z…
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The main goal of this explorative issue is to _read_ remote zarrs over HTTP, when this HTTP calls require some authentication/authorization. I would postpone thinking about supporting _write_ operatio…