dandi dandi-cli issues - Githubissues

dandi / dandi-cli

DANDI command line client to facilitate common operations

https://dandi.readthedocs.io/

Apache License 2.0

22 stars 27 forks source link

issues

Newest

Newest Most commented Recently updated Oldest Least commented Least recently updated

Do fail (raise Exception, should be non-0 exit) download if any download fails

#1536 yarikoptic opened 1 day ago
1
Refactor some download code for readability + ensure that we checksum resumed downloads

#1535 yarikoptic opened 1 day ago
1
Audit warning filter

#1534 asmacdo opened 3 days ago
2
Specify custom ulimit on nofiles to prevent infinite loop by billiard

#1533 yarikoptic closed 3 days ago
3
add one photon to metadata dict

#1532 bendichter closed 3 days ago
2
tests: update tests docker-compose with few changes from dandi-archive

#1531 yarikoptic closed 1 day ago
1
Rename `file` key to codecov-action to `files`

#1530 jwodder closed 5 days ago
1
[gh-actions](deps): Bump codecov/codecov-action from 4 to 5

#1529 dependabot[bot] closed 5 days ago
1
Add checksumming of the full download in case of retries

#1528 yarikoptic opened 1 week ago
0
Include LINC API as a supported instance type for DANDI CLI

#1527 aaronkanzer closed 1 week ago
7
Create option to bypass untagged CLI versions to integration test code properly

#1526 aaronkanzer closed 1 week ago
4
DEVELOPMENT.md test instructions give many failing tests

#1525 asmacdo closed 1 week ago
1
fix: replace dandi-api link with dandi-archive

#1524 asmacdo closed 1 week ago
2
Add "staggered"/gradual interruption for upload (and possibly download)

#1523 yarikoptic opened 1 week ago
0
Define/maintain centralized registry of instances

#1522 yarikoptic opened 1 week ago
2
Add configuration system

#1521 yarikoptic opened 1 week ago
2
Upload is inconsistent with NWB Zarr files

#1520 mavaylon1 opened 2 weeks ago
4
Add support for LINC staging and production APIs

#1519 aaronkanzer closed 1 week ago
6
Content Size (self.size) remaining at 0 for certain zarr-related assets

#1518 aaronkanzer opened 2 weeks ago
0
Extend `DandiInstance` to support APIs outside of `dandiarchive.org` subdomains

#1517 aaronkanzer opened 3 weeks ago
11
[Do not merge]: PR for diff of DANDI vs. LINC

#1516 aaronkanzer closed 3 weeks ago
1
validate: Add -f|--format option to optionally serialize into json, json_pp, json_lines or yaml

#1515 yarikoptic opened 1 month ago
0
Overhauling validation results to get them closer to cover different types of validators

#1514 yarikoptic opened 1 month ago
1
Enhance pynwb validation parsing to report the path within the file, fix pynwb typo

#1513 rly closed 1 month ago
3
Add xfail marks for some tests: test_nwb2asset_remote_asset, test_reextract_metadata, test_IteratorWithAggregation

#1512 yarikoptic closed 1 month ago
3
docker : started (?) to demand credentials for dandiarchive-api image?

#1511 yarikoptic opened 1 month ago
1
test_IteratorWithAggregation is flaky on Windows across pythons

#1510 yarikoptic opened 1 month ago
0
download: more consistent and exhaustive logging, new `DANDI_DEVEL_AGGRESSIVE_RETRY` mode, respect (?) Retry-After

#1509 yarikoptic closed 1 week ago
4
Add ability to setup tmate debug session

#1508 yarikoptic opened 1 month ago
1
test_reextract_metadata some times times out on NFS

#1507 yarikoptic opened 1 month ago
0
Switch to python 3.9 in dev-deps CI matrix run since dev deps are now beginning to drop Python 3.8 which is EOL soon

#1506 asmacdo closed 1 month ago
3
Bump test timeout to 330s

#1505 asmacdo closed 1 month ago
3
Drop claiming support and testing against EOL Python 3.8

#1504 asmacdo closed 1 month ago
7
Python 3.8 tests failing

#1503 asmacdo closed 1 month ago
2
Fixup URI scheme rendering in --help output

#1502 asmacdo closed 1 month ago
5
ls --help does not format supported URI schemes correctly

#1501 yarikoptic closed 1 month ago
0
download might fail with tons of `ValueError: Not all part hashes submitted` from dandietag

#1500 yarikoptic opened 2 months ago
2
ENH: log dandischema version and ensure we log (consistently) path for log messages in download

#1499 yarikoptic closed 1 month ago
5
Convergence between DANDI Layout and BIDS

#1498 yarikoptic opened 2 months ago
0
Use "cache_spec:False" in our copy_nwb_file helper while exporting NWB copy

#1497 yarikoptic closed 1 month ago
3
Disallow hdmf 3.14.4, make organize to not parallelize for a single file, log information about all exceptions while reading metadata for organize

#1496 yarikoptic closed 2 months ago
4
Make logging work in case of multiple child processes (e.g. via currently used joblib.Parallel)

#1495 yarikoptic opened 2 months ago
0
Test suite failure on HDMF 3.14.4

#1494 CodyCBakerPhD closed 2 months ago
5
upload: if any file/path is skipped due to not part of DANDI layout -- log WARNING upon completion or ask

#1493 yarikoptic opened 2 months ago
0
Remotely read/stream embargoed Zarr

#1491 kabilar opened 3 months ago
7
ENH: organize - show files with conflicts requiring adding _obj-

#1490 yarikoptic opened 3 months ago
1
1 out of 296 paths are not unique. We will try adding _obj- based on crc32 of object_id

#1489 nrsc closed 2 months ago
8
test_publish_and_manipulate and test_get_dandiset_published fail locally

#1488 yarikoptic closed 3 days ago
16
Fix host used in minio URLs

#1487 jwodder closed 3 months ago
2
Dump audit table to file specified by `DANDI_TESTS_AUDIT_CSV` envvar

#1486 jwodder closed 3 months ago
3