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**Needed Scripts:** Write a script that converts mappings into RDF
@nicolevasilevsky -- thank you for meeting with me a few weeks ago and confirming our approach looks reasonable. I am just docum…
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The guidance indicates the following recommended database and schema set up:
"export OMOP_SCHEMA='omop'
export OMOP='host=localhost dbname=postgres user=postgres options=--search_path='$OMOP_SCHEMA
…
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This forms part of a series of issues to document how SqlSynthGen is used to create a synthetic version of CCHIC OMOP data. This specific issue will document how we selected and created synthetic data…
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OMOP上的常见查询示例
普通表的
http://cdmqueries.omop.org
针对术语的
http://vocabqueries.omop.org/home
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When trying to do ls on the synpuf-omop open-access bucket I'm getting an error. I tried on my machine and the AWS console cloudshell:
`$aws s3 ls --no-sign-request s3://synpuf-omop/`
An error o…
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## Overview
We want mapping content from various sources to be converted into SSSOM TSV, and then converted into FHIR ConceptMap JSON, and uploaded to the TIMS server.
## Data sources
- [ ] 1. FH…
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Transferring from the CDM github
This is one example (of several) of an issue that needs to be raised with OMOP vocabulary team.
Industry standard code ‘GQ’
- Is a CPT and HCPCS modifier has th…
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# Mapping VISIT_CONCEPT_ID in VISIT_OCCURRENCE for multiple encounters in EPIC
## CDM or THEMIS convention?
THEMIS
## Table or Field level?
Field
## Is this a general convention?
No
## Summary of …
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Hello, I'm working on the french drug in OMOP (more specificaly on the detection of Drug drug interaction ), and I would like some additional information concerning the BDPM integration made in the OM…
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Some data types, found in some EHRs and related systems, that might be hard to model in OMOP 5.3. In other words, OMOP 5.3 doesn't have tables for these. There may be better support for genomics in 6.…