MIT-LCP mimic-omop issues

MIT-LCP / mimic-omop

Mapping the MIMIC-III database to the OMOP schema

MIT License

123 stars 47 forks source link

issues

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Add support for duckdb

#81 parisni opened 3 months ago
0
Provide a no-brainer docker-compose build

#80 parisni opened 4 months ago
2
Mapping NOTE entries back to NOTEEVENTS?

#79 stevenbedrick opened 5 months ago
0
Add warning within assumptions

#78 TheCedarPrince opened 1 year ago
0
[MISC] Thank You!

#77 TheCedarPrince opened 1 year ago
0
Update hyperlinks in repository README.md

#76 the-mayer opened 2 years ago
0
Broken hyperlinks in repository README.md

#75 the-mayer opened 2 years ago
0
Issue with note_type_concept_id column in notes table

#74 stevenbedrick opened 2 years ago
0
Various ETL issues: StandardizedClinicalDataTables/MEASUREMENT/check_etl.sql

#73 MattMuffin opened 2 years ago
0
Various ETL issues - not ok 1 - number of unique patients who die in the database

#72 MattMuffin opened 2 years ago
0
fix hyperlink markup in README

#71 jnothman opened 2 years ago
0
add link to readme (suggestion)

#70 vojtechhuser opened 3 years ago
0
Use OHDSI Rabit in a Hat tool for unit testing

#69 vojtechhuser opened 3 years ago
0
Use DQD and Achilles [Heel] for unit testing

#68 vojtechhuser opened 4 years ago
0
Discrepancy in counts between ICUSTAYS and VISIT_DETAIL

#67 spfohl opened 4 years ago
1
subtitle to the project (Argos)

#66 vojtechhuser opened 4 years ago
2
make ETL run in Google Big Query

#65 vojtechhuser opened 4 years ago
7
How to resolve the error in ETL?

#64 YiKuanLiu opened 4 years ago
3
README-run-etl.md guidance

#63 billudada78 opened 4 years ago
3
Identify deviations from the OMOP CDM spec using the Data Quality Dashboard

#62 AEW0330 opened 4 years ago
1
Error at command $ Rscript etl/ConceptTables/loadTables.R mimiciii

#61 MartOfTheNorth opened 4 years ago
1
complete sharing of this work (do not stop half way) (limited set of tables (partial person, partial visit, partial condition, partial measurement)

#60 vojtechhuser closed 4 years ago
14
how to get csvs in extras/concept

#59 sz891016 opened 5 years ago
0
Data Quality Evaluation for OMOP version of MIMIC-III

#58 chandryou closed 5 years ago
1
ICU predictions algorithms in OMOP format

#57 aparrot89 opened 5 years ago
2
vocab load fails on null values in vocabulary.vocabulary_reference about Health Plans

#56 turbomam opened 5 years ago
5
vocabulary_reference not null constraint on loading vocab using omop_vocab_load script

#55 FadyRezkGhattas opened 5 years ago
0
Make achille and schema spy accessible online

#54 parisni opened 5 years ago
0
creation of firstday folder

#53 aparrot89 opened 5 years ago
3
Use this ETL as a way to provide MIMIC in OMOP directly on the Physionet website

#52 vojtechhuser opened 5 years ago
34
How can I get the start time, end time and total amount\rate?

#51 schvetz1 closed 5 years ago
0
Allow for the ETL to use schema names other than "omop".

#50 spfohl closed 6 years ago
2
ERROR: duplicate key value violates unique constraint "xpk_measurement"

#49 smondet closed 6 years ago
7
ERROR: duplicate key value violates unique constraint "xpk_drug_exposure"

#48 smondet closed 6 years ago
2
Release NLP section pipeline

#47 parisni opened 6 years ago
1
Hard-coded absolute path in loadTables.R

#46 smondet closed 6 years ago
1
Clarification on the "standard concepts from Athena"

#45 smondet opened 6 years ago
4
CONDITION_OCCURRENCE missing `condition_status_source_concept_id`

#44 alistairewj opened 6 years ago
1
Windows instead of Unix

#43 rocholla opened 6 years ago
1
Duplicate concepts for prescriptions when NDC is null or zero

#42 alistairewj opened 6 years ago
0
Refactor ETL

#41 alistairewj closed 6 years ago
1
gcpt_note_section_to_concept

#40 rocholla closed 6 years ago
2
mimic_id_concept_seq

#39 rocholla closed 6 years ago
1
No standard for unknown admission/discharge location

#38 alistairewj opened 6 years ago
1
Should `qualifier` in scripts for procedure_occurrence be `modifier`?

#37 alistairewj closed 6 years ago
2
Mimic OMOP Common Data Model

#36 MiteshP0 closed 6 years ago
4
Reason for transfer event

#35 alistairewj opened 6 years ago
0
Extracting numbers from free text fields

#34 alistairewj opened 6 years ago
4
OBSERVATION vs MEASUREMENT

#33 alistairewj opened 6 years ago
0
Laboratory measurements

#32 alistairewj opened 6 years ago
0