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### Description of bug
Hi @vladsavelyev and @ewels
MultQC 1.17 fails to detect fastp files - the same works with MultiQC 1.16
I will attach the verbose output from MultiQC 1.16 as a comment so…
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### Description of bug
If htseq-count output files contain more than the two standard columns `feature` and `count`, they are ignored. The htseq-count user has the option to add further columns for e…
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Hi,
The readme mentions that t1k post analysis steps can do copynumber and novel SNP detection. Is there any detail regarding how to do the tasks? There is a t1k-copynumber.py, but I am not sure if…
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### Description of bug
For reference - posted this on MultiQC slack - https://multiqc.slack.com/archives/C04QMP84K5L/p1697356986698759
I had a question on MultiQC parsing Parabricks bammetrics fi…
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Hi,
I've been having some issues with yara_mapper. I've started having them just recently (not sure why, possibly singularity was updated on my HPC and it's requiring different options now?). I'd b…
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Hi,
I was wondering if there is anything that could be done to improve Nextflow's -resume functionality in the pipeline. I have resumed a run that failed on pVACseq but still the pipeline went all th…
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Hi it seems I'm keep running into space issues when trying to run jobs on AWS clusters using toil. I don't know how much is attributed to configurations on instance selection, and how much can I chang…
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Hi again, I am running the pipeline again but this time I am encountering the error as stated in the title. The logs are below
This is my slurm logs
````executor > local (44)
[- ] proce…
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Hello again, now the pipeline is getting this error:
```
executor > local (821)
[- ] process > merge_fastq -
[44/a23509] process > RegionsBedToIntervalList (R... [100%…
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Hi,
i'm encountering a chmod issue with pVACSeq:
```
executor > local (3)
[- ] process > merge_fastq -
[a4/caf946] process > RegionsBedToIntervalList (R... [100%] 1…