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Hi,
I have a big genome with 46,139,523,234 bases and 20131 contigs.
Here is the summary of the longest contigs.
```
ptg000004l 169819904
ptg000441l 158822330
ptg000279l 109104046…
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Potential readings to focus understanding on probability, mathematical statistics, algorithms, etc more deeply. Talk of applications will be secondary.
- [Statistical modeling: the two cultures](ht…
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Hello,
I'm one of the developers of [HINGE](https://github.com/fxia22/HINGE). We have been experimenting with integrating Racon into our pipeline. We like the current results but our current pipeline…
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Hi,
I used a small subset of LFW faces and performed a detection (crop) before feed forwarding the images into the most recent model trained with WebFaces. Next i do a pairwise Euclidean distance o…
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Hi,
this is my hal2assemblyHub.py command
`hal2assemblyHub.py jobstore mAcoRus1.1_vs_mm10.hal mAcoRus1.1_vs_mm10_hub --lod --alignability --gcContent --cladeExclusiveRegions --maxCores 20 --hub mA…
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Hello,
I have installed ORP according to the instructions but when running the 'Test the installation' section in the 'sampledata' folder I get this error:
Total time = 2.32095s
Reported 69 pair…
mb492 updated
5 years ago
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Frameshift aignments are very useful for Nanopore data, where indels are common. It can also be used for virus-related research, as [some phages have conversed programmed frameshifts](https://www.cell…
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My database contains lots of genomes, over 15k bacterial and all fungi from genbank, so it is unlikely for a result with 0 overlap. Also I had already run Clark and Kaiju and both return good results.…
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Hi,
When I was reproducing the E13 mouse head data according to the documentation, I encountered a bug during the 'Merging data modalities' step in the 'Pairwise alignment' section. The error me…
wsyyc updated
1 month ago
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I saw that the hal2chain tool was shelved. Is it possible to make a chain based on the hal file to speed up cross-species alignment? This would provide a cross-species chain that would be faster than …