-
### Problem to solve
PDB entries with extended Chemical Component Dictionary (CCD) or PDB IDs will be distributed in PDBx/mmCIF format only, as announced by the wwPDB in collaboration with the [PDBx…
-
@milot-mirdita Is there a way to extract the full length sequences of the PDB and the corresponding PDB files of hits to a query using foldseek
-
Hi,
Thanks for the amazing resource! I have backbone structures (from RFdiffusion that consist only of glycin) and I used ProteinMPNN to put a sequence into the backbones. It would be useful to pre…
-
Hey there, I have some ancient .pdb save files from Palm OS Game Boy emulators. Any chance that support could be added to convert them over to modern/standard formats?
-
### Description
See #2059 for background.
Having the clang pdbs would help us understand what the issue is and possibly suggest fixes/work around issues.
-
Hi,
I'm trying to use the prody_align function to align two selections and if I use mmCIF files as input the calcRMSD function would return a `float divison by zero` exception while if I use the p…
-
Hi jewettaij,
Recently I am using moltemplate to generate .data file. My system is composed of polymeric anions and Li-ion. So I build the .lt file by dividing the polymer into three parts, i.e. he…
-
### Describe the bug
When building the SDK in debug mode with cmake, it generates the .pdb files alongside the dlls in the build/src folder
But when installing, the pdb files are not copied in the…
-
During code analys it is better to have ability to decompile code to understand, what it does.
In this case it is better to add pdb files to final nuget package.
Additionally we will have ability …
-
Just stumbled upon the problem, that accessing any method that involves topology groups does not work, when creating a `Universe` with a PDB or GRO file. Both the `master` version 0.15.0, as well as …