YoshitakaMo localcolabfold issues

YoshitakaMo / localcolabfold

ColabFold on your local PC

MIT License

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issues

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Question: installation of localcolabfold unsuccessful due to pandas

#277 Red847208 closed 2 days ago
0
Question:will AF3 be added to this project?

#276 CykaZH opened 1 week ago
0
Question:cannot access install_colabbatch_linux.sh

#275 ZhaoPengpeng1116 opened 1 week ago
0
Using precomputed MSA and PDB files for running massive 3d structure prediction

#274 berkeucar opened 1 week ago
4
403 Forbidden message

#273 jjv5 closed 2 weeks ago
2
CUDA12.6, gcc9.4, but "There was an error before creating cudnn handle (500): cudaErrorSymbolNotFound : named symbol not found"

#272 Huilin-Li opened 2 weeks ago
0
code error running colabfold_batch with custom templates

#271 bioinfcib opened 3 weeks ago
4
Both ColabFold notebook and localcolabfold cannot predict this sequence.

#270 Huilin-Li opened 3 weeks ago
0
READMEs are one commit out of sync

#269 nejmeijer closed 4 weeks ago
1
Question: `bash install_colabbatch_linux.sh` automatically installs jax 0.4.28 which is incompatible with orbax-checkpoint 0.7.0

#268 Huilin-Li closed 3 weeks ago
1
Clarify where the update script should be run

#267 nejmeijer closed 4 weeks ago
0
Documentation unclear on where to run the update script

#266 nejmeijer closed 4 weeks ago
1
Custom templates when doing a series of runs

#265 TieliangGan opened 1 month ago
1
Question: Timeout while submitting to MSA server. Retrying...

#264 t1nglanwang opened 1 month ago
0
Question:Linux update isssue.

#263 3719left closed 1 month ago
0
How to change how the output files are named

#262 johnny-rodriguez opened 1 month ago
0
AttributeError: module 'jax' has no attribute 'linear_uti

#261 ohjeyy93 opened 1 month ago
4
[question]: command line params needed to run localcolabfold on a local server

#260 tamuanand closed 1 month ago
2
custom heterdimer multiple alignment format

#259 fglaser opened 2 months ago
3
[question]: What does the Warning mean when using localcolabfold

#258 tamuanand closed 2 months ago
9
Can I submit multiple folding jobs as a batch on one GPU in parallel?

#257 harshagrawal13 opened 2 months ago
1
limit

#256 Mar-Gra-creator closed 1 month ago
1
Question: Custom msa

#255 jimfeng9705 closed 2 months ago
3
MMseq2 API error

#254 GISTAL closed 1 month ago
1
Suddenly no gpu deteced, ratelimit, and no msa output...

#252 ohjeyy93 opened 2 months ago
13
Checking if my IP was rate limited?

#251 donal1 closed 2 months ago
16
Question: Force to use template with no sequence similarity

#250 Bienenwolf655 opened 3 months ago
2
Colabfold template selection

#249 GISTAL opened 3 months ago
0
AlphaFold Structure Generation using pdb template

#248 aashuph16221 closed 1 month ago
5
Running LocalColabFold for multimer inference with precomputed monomer MSAs for each chain

#247 miarosenfeld opened 3 months ago
0
Failed runs when no GPU devices is present.

#246 lyskov opened 3 months ago
0
why my colabfold_search run takes too long time?

#245 spark159 opened 3 months ago
3
Minimal ad-hoc sequence database

#244 agarrubio opened 4 months ago
0
Functionality to use both custom MSA and fasta with multiple sequences

#243 danielguion closed 4 months ago
1
Why does pLDDT get lower with the increase of recycle? Shouldn't the confidence level get higher with recycle

#242 15019669985 opened 4 months ago
0
Question: Warning: importing 'simtk.openmm' is deprecated

#241 MichaelCato opened 5 months ago
1
Question: Compatibility Issues With Jax and TensorFlow

#240 MichaelCato opened 5 months ago
6
CUDA_ERROR_ILLEGAL_ADDRESS: an illegal memory access was encountered

#239 ilnamkang opened 5 months ago
0
Question: LocalColabFold failed on CPU mode

#238 Immortals-33 closed 1 month ago
8
Question:"Error downloading files" when trying to use deepfold model

#237 CykaZH closed 6 months ago
2
Question: DNN library initialization failed

#236 laolanllx closed 2 weeks ago
13
Question: FAILED_PRECONDITION: DNN library initialization

#235 tanmoyp635 opened 6 months ago
1
Timeout while submitting to MSA server. Retrying...

#234 zhangjuan233 closed 6 months ago
1
Question: How can I obtain ~same speed as the server ?

#233 crisdarbellay opened 6 months ago
3
Cyclic peptide Question:

#232 aishiba0721 closed 1 month ago
2
TLS/SSL connection issue on Docker desktop

#231 AzumaSerenThePatriot opened 6 months ago
1
Question:

#230 zhangjuan233 closed 1 month ago
1
Checkpointing for slurm script?

#229 apal6 closed 3 months ago
0
When I degraded the jax, the code can run on GPU, but Not Enough GPU memory?

#228 Tiramisu023 closed 7 months ago
1
Question: Installation issue?

#227 apal6 closed 7 months ago
0