YoshitakaMo localcolabfold issues

YoshitakaMo / localcolabfold

ColabFold on your local PC

MIT License

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issues

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AttributeError: module 'jax' has no attribute 'linear_uti

#261 ohjeyy93 opened 1 week ago
3
[question]: command line params needed to run localcolabfold on a local server

#260 tamuanand closed 3 days ago
2
custom heterdimer multiple alignment format

#259 fglaser opened 1 week ago
3
[question]: What does the Warning mean when using localcolabfold

#258 tamuanand closed 1 week ago
9
Can I submit multiple folding jobs as a batch on one GPU in parallel?

#257 harshagrawal13 opened 2 weeks ago
0
limit

#256 Mar-Gra-creator closed 1 week ago
1
Question: Custom msa

#255 jimfeng9705 closed 3 weeks ago
3
MMseq2 API error

#254 GISTAL closed 1 week ago
1
Suddenly no gpu deteced, ratelimit, and no msa output...

#252 ohjeyy93 opened 1 month ago
13
Checking if my IP was rate limited?

#251 donal1 closed 1 month ago
16
Question: Force to use template with no sequence similarity

#250 Bienenwolf655 opened 1 month ago
2
Colabfold template selection

#249 GISTAL opened 1 month ago
0
AlphaFold Structure Generation using pdb template

#248 aashuph16221 closed 1 week ago
5
Running LocalColabFold for multimer inference with precomputed monomer MSAs for each chain

#247 miarosenfeld opened 1 month ago
0
Failed runs when no GPU devices is present.

#246 lyskov opened 2 months ago
0
why my colabfold_search run takes too long time?

#245 spark159 opened 2 months ago
3
Minimal ad-hoc sequence database

#244 agarrubio opened 2 months ago
0
Functionality to use both custom MSA and fasta with multiple sequences

#243 danielguion closed 3 months ago
1
Why does pLDDT get lower with the increase of recycle? Shouldn't the confidence level get higher with recycle

#242 15019669985 opened 3 months ago
0
Question: Warning: importing 'simtk.openmm' is deprecated

#241 MichaelCato opened 3 months ago
1
Question: Compatibility Issues With Jax and TensorFlow

#240 MichaelCato opened 3 months ago
3
CUDA_ERROR_ILLEGAL_ADDRESS: an illegal memory access was encountered

#239 ilnamkang opened 4 months ago
0
Question: LocalColabFold failed on CPU mode

#238 Immortals-33 opened 4 months ago
8
Question:"Error downloading files" when trying to use deepfold model

#237 CykaZH closed 4 months ago
2
Question: DNN library initialization failed

#236 laolanllx opened 4 months ago
12
Question: FAILED_PRECONDITION: DNN library initialization

#235 tanmoyp635 opened 4 months ago
1
Timeout while submitting to MSA server. Retrying...

#234 zhangjuan233 closed 4 months ago
1
Question: How can I obtain ~same speed as the server ?

#233 crisdarbellay opened 5 months ago
3
Cyclic peptide Question:

#232 aishiba0721 closed 1 week ago
1
TLS/SSL connection issue on Docker desktop

#231 AzumaSerenThePatriot opened 5 months ago
1
Question:

#230 zhangjuan233 closed 1 week ago
1
Checkpointing for slurm script?

#229 apal6 closed 2 months ago
0
When I degraded the jax, the code can run on GPU, but Not Enough GPU memory?

#228 Tiramisu023 closed 5 months ago
1
Question: Installation issue?

#227 apal6 closed 5 months ago
0
How to bypass the server when using MSA single sequence and have .cif file as template.

#226 johnny-rodriguez closed 5 months ago
6
Question: Execution error (stopped and won't proceed)

#225 BioSpace9 opened 6 months ago
0
ModuleNotFoundError: No module named 'jax.extend' related to #209, #210

#224 ZubuNoShoshinsha closed 6 months ago
9
Question: Still have erros related with MSA serve when I run localcolabfold on HPC System, with --templates --custom-template-path been added

#223 Neo-xbx-00 opened 6 months ago
3
localcolab fold skipping other sequences in csv file?

#222 amoschoomy opened 6 months ago
2
Memory usage on Apple Silicon (M3)

#221 DomML opened 6 months ago
0
Question: Where are the output PDB files saved? After a successful run, there no PDB file present.

#220 SerpentByte closed 7 months ago
2
option to define a3m file name based on protein header?

#219 flyark opened 7 months ago
1
Question: use of MMseqs2 locally, problem with the databases.

#218 crisdarbellay closed 5 months ago
1
Question: Is it possible to output a table of IDDT / pLDDTs?

#217 dbolser closed 7 months ago
2
Numerous NumPy issues after update

#216 masifali404 closed 7 months ago
2
ValueError: Minimization failed after 100 attempts.

#215 jodo231 opened 7 months ago
2
GPU memory exhaustion

#214 RobinVanSchendel opened 7 months ago
1
Question: After updating from cuda 11.5 to 11.8+, do I need to re-install localcolabfold?

#213 dbolser opened 7 months ago
1
Jax has no attribute 'linear_util'

#212 YousufAKhan closed 7 months ago
10
colabfold_batch tries to connect to internet even if msa provided as parameter

#211 jflucier opened 7 months ago
6