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Right now, all metadata for a predicted peptide appears in the output FASTA ID. @keithchev suggested to dump everything other than the id and peptide index into the description field using space-separ…
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Dear all,
The proposal has been made to obsolete GO:0097304 lipoprotein biosynthetic process via signal peptide cleavage
see https://github.com/geneontology/go-ontology/issues/28575.
The reason …
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```
In the current specification it's stated (page 26): "The protein's accession
the peptide is associated with. In case no protein section is present in the
file or the peptide was not assigned to …
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_**Case 1: Inserting the fragment below CHEM structure with R1-R1, R2-R2 bonds**_
**Steps to Reproduce**
1. Open two Ketcher browser tabs – the Macro mode
2. Open this file (first unzip) [CHEM R…
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```
In the current specification it's stated (page 26): "The protein's accession
the peptide is associated with. In case no protein section is present in the
file or the peptide was not assigned to …
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Greetings, dear colleagues,
I am a 5th-year student at Lomonosov Moscow State University.
I have **one question about OnionNet**: is it possible to use this neural network to predict "protein-pep…
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I wonder if PanPep can be used to predict the probability of binding of unknown BCR CDR3 to antigenic peptides if reference data sets for BCR-peptide binding are now available. Looking forward to your…
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Suggestions from @Antonialock
Some of these classes are not used often, but only show the classes that are present anyway
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Hello, I want to use DEqMS to analyze my LFQ dataset, which consists of five samples (each in triplicate) and analyze the DEPS among all ten possible comparison pairs. Should I use the values from the…
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[feature request]
I was wondering if there is any desire to implement "adding the annotated ions on the peptide sequence string". "P]E]P]TIDEP[I[N[K" kind of deal ...
like it is show in the foll…