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*************edited November 20***************
**TRACKER**
BA.2.86: -C6541T,A7842, C8293T, G8393A (new query thx to @aviczhl2 )
JN.1 QUERY: C18894T, T15756A, A7842, -C6541T
XDD Query : C6541T…
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I'm trying to understand the `detect:mapping_tolerance` parameter of FeatureFinderIdentification. According to the documentation, this parameter is the allowed difference of RT between the PSM and fea…
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Hello,
**Describe the bug**
I am running antismash over a set of assembled genomes and I am having a weird error on some of the genomes - it runs fine on most, but give me this error on a few. Ple…
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Hi @jtlovell,
Switching from v0.9.3, I encountered some issues and hope to solve them with your help. Your latest release as well as today's master branch `devtools::install_github("jtlovell/GENESP…
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Hi, we are trying to split an idXML file that was merged from fractionated ones, and IDRipper stalls on it. The file is about 2.5G, with 31 fractions. The last run was submitted about 9 hours ago. The…
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Here I present a list of techniques, which I think should be covered by our proteomics tutorials. The list will be incomplete and so far not ordered after priorities. Any help and comments are appreci…
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Hello,
Thank you for the tool. I am interested in running some files. However, am consistently running into this error. I cannot find an error message in the code that allows me to troubleshoot thi…
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One thing I've noticed, from going through the code: we switch between Missing Value, 0, and NA throughout the code:
1. Input data from MaxQuant is given as "Missing Value" when the protein/peptide…
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Dear twopin,
It is my honor to read your paper and codes, excellent idea to merge so many data and excellent model design. I try to reproduce your work.
In data_prepare/step1_pdb_process.py, from …