-
File salad cleanup!
We could have many example directories from different domains (phylogenetics, genomics, astronomy, ecology, etc) where you've inherited a terrible directory from a previous studen…
-
Apparently `Pasta` is looking for the included SATe tools in the wrong location:
```
(base) $ conda create -n pasta pasta
(base) $ conda activate pasta
(pasta) $ run_pasta.py -i longASV.fasta -d R…
-
### Author(s) of proposal
Li-Bing Zhang, Xin-Mao Zhou
### Name of taxon
Hovenkampia
### Rank of taxon
Genus
### Approximate number of species affected
3
### Description of change
Hovenkampia …
-
Now on days, knowing species number and delimitation of species is a essential task for biodiversity purposes and/or conservation issues. It will allow to identify conservation units and endangered sp…
-
Title: Establishment and lineage dynamics of the SARS-CoV-2 epidemic in the UK.
# General Information
## Please paste a link to the paper or a citation here:
Link: https://science.sciencema…
-
File format and software port compatibility matrix for bioSyntax.
| | status |
|---|:------------------|
| X | Syntax Complete |
| o | In Development |
| - | Unavailable …
-
### Name of taxon
×Abacopterella
### Rank of taxon
Nothogenus
### Approximate number of species affected
1
### Description of change
Recognition of the nothogenus × _Abacopterell…
-
When importing (unrooted) phylogenies, the current phyloseq tutorials and/or functions implement a very ad hoc rooting of the tree, placing the root at a randomly picked tip, like so:
``` R
tree.root…
-
### Author(s) of proposal
Lucas V. Lima, Thaís E. Almeida & Alexandre Salino
### Name of taxon
Sticheropsis
### Rank of taxon
Genus
### Approximate number of species affected
2
…
-
I see the export command allows you to export .nwk as .json. Can this operation be done in reverse (i.e. convert augur v2 .json file to a .nwk file.)?
mvolz updated
2 years ago